BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950246
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family... 1391 0.0
AT5G51620.2 | Symbols: | Uncharacterised protein family (UPF01... 196 2e-49
> AT5G55940.1 | Symbols: emb2731 | Uncharacterised protein family
(UPF0172) | chr5:22655998-22658048 REVERSE LENGTH=1039
Length=1039
Score = 1391 bits (753), Expect = 0.0
Identities = 818/850 (96%), Gaps = 1/850 (0%)
Strand=Plus/Plus
Query 1 GTGAGTCGCCGATCGAGTTAGAGATGGGGATGGGAAGTAACGGCGAATTGAAGTATGAGA 60
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 132 GTGAGTCGCCGATCGAGTTAGAAATGGGAATGGGAAGTAACGGAGAATTGAAGTATGAGA 191
Query 61 TCTCCCAGAACGCGTACATCAAACTCGTTCTCCACTCGCTGCGACACAAGACGGCGGCGG 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 192 TCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAAGACGGCGGCGG 251
Query 121 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAG 311
Query 181 ATTCTGTGCCGCTCTTTCACTCTAACCTTGCTCTCCTCCCTCCTCTCGAGATCTCCCTCA 240
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 312 ATTCTGTGCCGCTCTTTCACTCTAACCTCGCTCTCCTTCCTCCTCTCGAGATCTCCCTCA 371
Query 241 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCACGCAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 372 TCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAA 431
Query 301 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAGAACATTGGCGATCACATCT 360
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 432 ACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTT 491
Query 361 CTCGCTATTTCCCTCAAGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 CTCGCTATTTCCCTCAGGCACCAATTCTCTTGTTGAACAACAAAAAGCTTGAAGCCTTAT 551
Query 421 CAAAGGGTAAAGAGCGTAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 CAAAGGGTAAAGAGCGAAGCCCTGTGATGCAGCTCTGTGTGAAGGATGCTTCTAAGAACT 611
Query 481 GGAGAGTGGTTGGAGCAGATGGAGGAAGCAAGCTACTGTTAAAAGAGCCATCGGCCAATG 540
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 612 GGAGAGTAGTTGGAGCAGATGGAGGAAGCAAGCTACTCTTAAAAGAGCCATCGGCCAATG 671
Query 541 TAATTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TAGTTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATC 731
Query 601 ACCTTGATGATGTTACCAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGTGTAT 660
| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 732 ATCTTGATGATGTAACAAAGGACTGGCTAAACCCTGGACTTTTCAACTGAAGATGGGTAT 791
Query 661 GCGATATAGCTAAATTAGACTTTTGCTTTCATCATCGTCAGTCTaaaaacaaaaaa-TTC 719
|||| ||||||||| ||||||||||||||||||||| || ||| |||||||||||| |||
Sbjct 792 GCGACATAGCTAAACTAGACTTTTGCTTTCATCATCTTCTGTCGAAAAACAAAAAAGTTC 851
Query 720 TCGGAGACCCTTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTACACAG 779
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 852 TCGGAGACCATTGTTTAAAATTTCCCTTGAATCTTGTTAAAGTATTATCCAGCTATGCAA 911
Query 780 CAGAGCTCAAATCACTTTTAATTGGTACACATCTTAAACCTTAGTTTTATCATTTGAATG 839
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 912 CAGAGCTCAAATTACTTTTAATTGGTACACATCTTAAACCTTAGTTATATCATTTGAATG 971
Query 840 ATATCTCTTG 849
|||||| |||
Sbjct 972 ATATCTTTTG 981
> AT5G51620.2 | Symbols: | Uncharacterised protein family (UPF0172)
| chr5:20967098-20968027 FORWARD LENGTH=324
Length=324
Score = 196 bits (106), Expect = 2e-49
Identities = 112/115 (97%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 235 CCCTCATCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 CCCTCATCATGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTC 126
Query 295 ACGCAAACGAGAGGTTTGATGACGTTGAGCTCTGTGGTGTGGCTAAGAACATTGG 349
| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 127 ATGCAAACGAGAGGTTTGATGATGTTGAGCTCTGTGGTGTGGCTAAAAACATTGG 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5