BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950248
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 3182 0.0
> AT5G55960.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0118 (InterPro:IPR002549);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:22662576-22665087 FORWARD LENGTH=2422
Length=2422
Score = 3182 bits (1723), Expect = 0.0
Identities = 1900/1986 (96%), Gaps = 9/1986 (0%)
Strand=Plus/Plus
Query 8 AGAGATTTGATTGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCTAC 67
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 139 AGAGA-TTGATCGATGGAATTGGTCCCGTACGATTCGGAGACGAAATCATCGATCCCCAC 197
Query 68 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCGCGTAAACCTCAAGACCCTCC 127
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 198 AAATCTCGCGTGGCAAGAGATGTTTCGTTCCGCTTCATCTCGTAAACCTCAAGACCCTCC 257
Query 128 G---TCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCATCCGGCAA 184
| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 258 GTCTTCTTCTTCTTCATCGCCACCGCGTAAACCTTCCGGCGATGGATCATCA---AGCAA 314
Query 185 AACATCTTTATCAACCGCTGATTCACAAGCACGTCTCGCTATGTACATAGCAATGGCTCA 244
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||
Sbjct 315 AACATCTTTATCAACCGTTGATTCCCAAGCCCGTCTCGCTATGTACATAGCAATGGCTCA 374
Query 245 CGCTGGTCTCGTTTTCGCCATTTGTGTTCTGTATTTCGTTGGAAAGCTATTACAAGAGTA 304
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 375 CGCTGGTCTCGCTTTCGCCATTTGTGTTCTGTATTTCGTCGGAAAGCTATTACAAGAGTA 434
Query 305 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCGTTACGAGGTATTCAAGAAAC 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 435 TCTAAGACCGATTCAATGGGCGATTCTCTGTTCGATTCCTTTACGAGGTATTCAAGAAAC 494
Query 365 CCTTGTTGATTTCTGGAGTGAGCCTTTGAAATTAGGGCTAACGGAAGTTGTTCTCGCTGT 424
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 495 CCTTGTTGATTTCTGGAGCGAGCCTTTGAAATTAGGGCTTACGGAAGTTGTTCTCGCTGT 554
Query 425 TCCTGTTTCTGTCTTCAATGTTTTCATCGGATCCATTGTGGATATTAAAAATC-TCTGCT 483
|||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||
Sbjct 555 TCCTGTTTCTGTCTTCAATGTTTTCATCGGGTCGATTGTGGATATTAAAAA-CGTCTGCT 613
Query 484 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGGTACTGGGT 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 614 TTAGGGTTTTTCTTAGGAGATCGAAACCTAAGAGAACGAGGAAGAAGAACGATACTGGGT 673
Query 544 TTTCCAAATTGGTTAGATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 603
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TTTCTAAACTGGTTAAATGGTTAGTCTCTTTTGGTGTCTTTGTCATTGCTTATGAGAGGA 733
Query 604 TTGGGGGAATTGGGTCTCTTGTGATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 663
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 734 TTGGTGGAATTGGGTCTCTTGTCATTCTCTCTTTAGGGTTTTTGTTTAGTTCCAAGAATG 793
Query 664 TCGATTCGTCTCTCTCTGCGGTTTCTTCTCTGAGGAGTAATAGTTTTAGGAGAAGCTATT 723
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 794 TTGATTCGTCTCTCTCTGCGGTCTCTTCTCTGAGGAGTAATAGTTTTAGGAGAAGCCATT 853
Query 724 TCACTGCTTATTTCACTAGAGGGATAATGAAGAGATTGAATACAATTGTTGCTATTGGTT 783
|||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||
Sbjct 854 TCACTGCTTATTTCACTAGAGGGATAATGACGAGATTGAATACTATAGTTGCTATTGGTT 913
Query 784 TGATTGTGCTTATGATTGTTGGTTCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATCG 843
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 914 TGATTGTGCTCATGATTGTTGGATCTTTGACTGGTGTCATCTTCTTCTCGTATAAGATTG 973
Query 844 GTGTTGAAGGGAAAGACGCGGTTTATTCTTTAAAATCTCATGTTGAAGAGAGTAATTACG 903
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct 974 GTGTTGAAGGGAAAGATGCTGTTTATTCTCTGAAATCTCATGTTGAAGAGAGTAATTACG 1033
Query 904 CTGAGAAGATTGGAATCAAGCAATGGATGGATGAGAATGATGTTCCTGGAATGGTGGATA 963
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1034 CTGAGAAGATTGGGATCAAGCAATGGATGGATGAGAATGATGTTCCGGGAATGGTTGATA 1093
Query 964 TGTATACGACGAAGTTTTATGAAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGT 1023
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 TGTATACAACGAAGTTTTATGAAACGGTTTCTGAGCAGATTGATAGTTTGGCAATGCAGT 1153
Query 1024 ATAATATGACGGAGTTAGTCACGGGGATTAAGCATTTCGTGATCGGGCATCCTCAGAACA 1083
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1154 ATAATATGACGGAGTTAGTCACTGGGATTAAGCATTTTGTGATCGGGCATCCTCAGAACA 1213
Query 1084 CGTCGACACCATCTACGGCGCTTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTT 1143
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 CGTCGACGCCTTCCACGGCGCTTATAACTCCGTCTCCTTATACAGAGAAGCTCATGAGTT 1273
Query 1144 TGAGGACTCGGGTTAAGAATCGAGAATGGAGTCAGATCTACTCGGAGGTTGATGTGATTT 1203
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct 1274 TGAGGACTCGGGTTAAGAATCGAGAGTGGAGTCAGATATACTCGGAGGTTGATGTGATCT 1333
Query 1204 TCAGGGAGCTTATTATCACAAGAGAAGATTTGGTGGAGAAAGCTAAAGGCTTTGCTGTTA 1263
||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct 1334 TCAGGGAGCTTATTATCACTAGAGAAGATTTAGTAGAGAAAGCTAAAGGCTTTGCTGTTA 1393
Query 1264 AAGGAATGGATGTATCTCAACGGGTTTTCTCAAGCAGCGCATCAGTTGTTGGAGGCGGTG 1323
|||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1394 AAGGAATGGATGTATCGCAACGGGTTTTCTCGAGCAGCGCATCGGTTGTTGGAGGCGGTG 1453
Query 1324 CTAAGTTCGTTTTCTCTATTGGAAACTTGATAATCTCGGGAGCAGCAGAGTTTTTCAACT 1383
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1454 CTAAGTTCGTTTTCTCTATTGGAAACTTGATAATCTCAGGAGCAGCAGAGTTTTTCAACT 1513
Query 1384 TTATCTCTCAGCTAATGGTTTTCATTTGGGTTTTATACATTCTAATCACATCAGAATCAG 1443
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1514 TTATCTCTCAGCTAATGATTTTCATTTGGGTTTTATACATTCTTATCACATCAGAATCAG 1573
Query 1444 GTGGTGTGACTGAGCAAGTCATGAACATGCTCCCGATCAACGCAAGTGCTAGAAACAGAT 1503
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1574 GCGGTGTGACTGAGCAAGTCATGAACATGCTCCCGATCAACGCAAGCGCTAGAAACAGAT 1633
Query 1504 GTGTCGAAGTCCTAGACTTAGCGATCTCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCT 1563
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1634 GTGTCGAAGTCTTAGACTTAGCGATATCCGGCGTGCTTTTAGCAACAGCGGAAATCGCCT 1693
Query 1564 TCTTCCAAGGATGTCTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACA 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 TCTTCCAAGGATGTCTCACTTGGCTATTGTTTAGACTATACAATATACATTTCCTTTACA 1753
Query 1624 TGTCGACCGTTCTTGCCTTCATCAGTGCTCTGTTACCGATTTTCCCTTACTGGTTTGCGA 1683
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1754 TGTCAACCGTTCTTGCCTTCATCAGCGCTCTGTTACCGATTTTCCCTTACTGGTTCGCGA 1813
Query 1684 CAATCCCAGCGGCTTTGCAACTAGTGCTAGAAGGAAGATACATTATTGCAGTTACTCTAT 1743
||||||||||||||||||| || ||||||||||||||||| ||| ||||||| | | |||
Sbjct 1814 CAATCCCAGCGGCTTTGCAGCTCGTGCTAGAAGGAAGATATATTGTTGCAGTGATTTTAT 1873
Query 1744 CTGTGACTCATCTTGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTG 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1874 CTGTGACTCATCTTGTGCTAATGGAGTATGGTGCTTCAGAGATTCAAGATGACATTCCTG 1933
Query 1804 GGTCCAATGCTTACATTACTGGACTAAGTATTATTGGTGGAGTGACTCTGTTTCCTTCTG 1863
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1934 GGTCCAATGCTTACCTTACTGGACTAAGTATTATTGGTGGAGTCACTCTGTTTCCTTCTG 1993
Query 1864 CTCTCGAGGGAGCGATAATGGGACCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATC 1923
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1994 CTCTAGAGGGAGCGATAATGGGGCCGTTGATAACGACGGTGGTGATTGCTTTGAAGGATC 2053
Query 1924 TATATGCAGAGTTTGTTCTGAATGATCCAAAGAAGATCAATTAGATCTTATTGGTTTCTT 1983
| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||
Sbjct 2054 TGTATGCAGAGTTTGTTCTGAATGAGCCAAAGAAGATCAATTAGTTGTTATTGGTTTCTT 2113
Query 1984 TGATAG 1989
| ||||
Sbjct 2114 TAATAG 2119
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5