BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950253

Length=385
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G55980.1 | Symbols:  | serine-rich protein-related | chr5:22...   538    1e-152


> AT5G55980.1 | Symbols:  | serine-rich protein-related | chr5:22670301-22670642 
FORWARD LENGTH=342
Length=342

 Score =  538 bits (291),  Expect = 1e-152
 Identities = 325/342 (95%), Gaps = 0/342 (0%)
 Strand=Plus/Plus

Query  22   ATGACGAAAGAAAACCCTTCAACCCTAAATCTCGGACAACCTACGACGCAAGAAAAGTAT  81
            ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct  1    ATGACGAAAGAAAACCCTTCAACCCTAAATCTCGGACAACCTAAGGCACAAGAAAAGTAT  60

Query  82   TCCACAAGTTTAGCCAAGATCAACCCTAAACCCTCCGATGGCTCTACCGTTGAATCGAAG  141
            ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct  61   TCCACAAGTTTAGCCAAGATCAACCCTAAACCCTCCGGTAGCTCTACCGTTGAATCGAAG  120

Query  142  AGGCAAGACCATAACTCACCGAGTTTAAAACGTTGGAGATCGTCCTCCGGTAAACCGACG  201
            || |||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct  121  AGCCAAGACAATAACTCACCTAGTTTAAAACGTTGGAGATCGTCCTCCGGTAAATCTACG  180

Query  202  AGGCAAAATTGTCTATGTTCTCCGACGACACACGCCGGTTCTTTCAGGTGCAGGTACCAC  261
            |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  181  AGGCTAAATTGTTTATGTTCTCCGACGACACACGCCGGTTCTTTCAGGTGCAGGTATCAC  240

Query  262  CGCGTTGATTCGTTGACACGTGTCGGGTCTATTGGGTCGAACCTCGCGGTGTTATTGTCA  321
            |||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| 
Sbjct  241  CGCGTTGATTCGTTGACACGTGCCGGGTCTATTGGGTCGAACCTCGCTGTTTTATTGTCG  300

Query  322  TCCAAGTCGAGCCGGTTTAGTGACTCCCTCAAGGCTCAGTAA  363
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TCCAAGTCGAGCCGGTTTAGTGACTCCCTCAAGGCTCAGTAA  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18146657389


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5