BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950254
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G55990.1 | Symbols: CBL2, ATCBL2 | calcineurin B-like protei... 1177 0.0
AT4G26570.2 | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 | ch... 680 0.0
> AT5G55990.1 | Symbols: CBL2, ATCBL2 | calcineurin B-like protein
2 | chr5:22671452-22673855 FORWARD LENGTH=1144
Length=1144
Score = 1177 bits (637), Expect = 0.0
Identities = 679/700 (97%), Gaps = 0/700 (0%)
Strand=Plus/Plus
Query 15 TATATCATGTCGCAGTGCGTTGACGGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGT 74
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 182 TATATCATGTCGCAGTGCGTTGACGGTATCAAGCATTTATGCACCTCTGTTTTAGGGTGT 241
Query 75 TTTGATCTTGATTTGTATAAACAATCCGGTGGTCTTGGAGATCCTGAATTGCTTGCAAGA 134
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 242 TTTGATCTTGATTTGTATAAACAATCTGGTGGCCTTGGAGATCCTGAATTGCTTGCAAGA 301
Query 135 GACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTGTTTAAGAAAATTAGC 194
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 302 GACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTTTTTAAGAAAATCAGC 361
Query 195 AGTGCCGTGATTGATGATGGGCTTATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAG 254
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 362 AGTGCCGTGATTGATGATGGGCTAATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTAAG 421
Query 255 ACAAATAAAAAAGAGAGCTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAACAC 314
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 422 ACAAATAAAAAAGAGAGTTTGTTTGCAGATCGGGTTTTCGATTTGTTTGATACAAAGCAC 481
Query 315 AATGGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTATTTCACCCAAATGCG 374
||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 482 AATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCG 541
Query 375 CCTATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTC 434
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 542 CCTATAGATGACAAAATTCACTTTTCATTTCAGCTATATGATCTTAAACAGCAAGGGTTT 601
Query 435 ATCGAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAAT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 ATCGAACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCTGAATCTGGAATGAAT 661
Query 495 TTGAAGGATACTGTCATAGAGAACATAATCGATAAGACGTTTGAGGAAGCAGACACAAAA 554
||||||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||
Sbjct 662 TTGAAGGATACTGTCATTGAGGATATAATCGACAAGACGTTTGAGGAAGCAGACACAAAA 721
Query 555 CACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTTCTTAGACATCCCAGCCTT 781
Query 615 CTGAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTG 674
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 782 CTGAAGAACATGACTCTTCAATATCTCAAGGATATCACGACTACGTTTCCAAGCTTTGTG 841
Query 675 TTCCATTCTCAGGTTGAAGATACCTGAAAAAACAAAAGCA 714
||||||||||||||||||||||||||||||| ||||||||
Sbjct 842 TTCCATTCTCAGGTTGAAGATACCTGAAAAAGCAAAAGCA 881
> AT4G26570.2 | Symbols: ATCBL3, CBL3 | calcineurin B-like 3 |
chr4:13408422-13411070 REVERSE LENGTH=1095
Length=1095
Score = 680 bits (368), Expect = 0.0
Identities = 607/720 (84%), Gaps = 25/720 (3%)
Strand=Plus/Plus
Query 15 TATATCATGTCGCAGTGCGTTGACGGTTTCAAGCATTTATGCACCTCGGTTTTAGGGTGT 74
|||||||||||||||||| | ||||||||||||||| ||||| |||| |||| |||||
Sbjct 211 TATATCATGTCGCAGTGCATAGACGGTTTCAAGCATGTATGCTCCTCTTTTTTCCGGTGT 270
Query 75 TTTGATCTTGAT-TTGTATAAACAATCCGGTGGTCTTGGAGATCCTGAA-TTGCTTGCAA 132
|||||| | ||| || || |||||||| || || ||||| || |||||| || ||||| |
Sbjct 271 TTTGATATCGATATT-TACAAACAATCTGGAGGCCTTGGTGACCCTGAACTT-CTTGCGA 328
Query 133 GAGACACTGTTTTTAGTGTGAGTGAAATAGAAGCTCTTTATGAGCTGTTTAAGAAAATTA 192
|||| || |||||||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 329 GAGAGACAGTTTTTAGCGTGAGTGAAATAGAGGCTCTCTATGAGCTGTTTAAGAAAATCA 388
Query 193 GCAGTGCCGTGATTGATGATGGGCTTATAAACAAGGAAGAGTTTCAGTTGGCTTTGTTTA 252
||||||| ||||||||||||||||| |||||||||||||| |||||||| || ||||| |
Sbjct 389 GCAGTGCTGTGATTGATGATGGGCTAATAAACAAGGAAGAATTTCAGTTAGCCTTGTTCA 448
Query 253 AGACAAATAAAAAAGAGAGCTTGTTTGCAGATCGGG-----T------T-TTCGATTTGT 300
||||||||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct 449 AGACAAATAAAAAAGAGAGCTTGTTTGCAGACCGGTACCAATCACAGGTATTCGATTTGT 508
Query 301 TTGATACAAAACACAATGGAATACTCGGGTTTGAGGAGTTTGCCCGTGCTCTCTCCGTAT 360
|||| ||||| || ||||||||||| ||||||||||||||||| ||||||||||| || |
Sbjct 509 TTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCT 568
Query 361 TTCACCCAAATGCGCCTATAGATGACAAAATCCACTTTTCATTTCAGCTATATGATCTTA 420
|||| |||||||| || ||||| ||||| || ||||||| |||||||||||||||||||
Sbjct 569 TTCATCCAAATGCTCCCATAGAAGACAAGATTGACTTTTCGTTTCAGCTATATGATCTTA 628
Query 421 AACAGCAAGGGTTCATCGA-ACGGCAAGAGGTGAAACAAATGGTTGTCGCTACGCTTGCT 479
| |||||||| ||||| || | ||||||||||||| |||||||| || ||||| ||||||
Sbjct 629 AGCAGCAAGGTTTCATAGAGA-GGCAAGAGGTGAAGCAAATGGTGGTGGCTACTCTTGCT 687
Query 480 GAATCTGGAATGAATTTGA-AG--GATACTGTCATAGAGAACATAATCGATAAGACGTTT 536
|| || || ||||| || || || | | |||||||| |||||||| ||||| |||
Sbjct 688 GAGTCCGGCATGAACCTGTCAGACGAAA-T--CATAGAGAGTATAATCGACAAGACATTT 744
Query 537 GAGGAAGCAGACACAAAACACGATGGAAAGATCGATAAGGAAGAGTGGAGAAGCCTTGTT 596
|||||||| || |||||||| || || | ||||||||||||||||||||||| |||||||
Sbjct 745 GAGGAAGCTGATACAAAACATGACGGGAGGATCGATAAGGAAGAGTGGAGAACCCTTGTT 804
Query 597 CTTAGACATCCCAGCCTTCTGAAGAACATGACTCTTCAGTATCTCAAGGATATCACGACT 656
|| || ||||| |||||| ||||| |||||||| |||||||| |||||||| || |||
Sbjct 805 CTCAGGCATCCTTCCCTTCTAAAGAATATGACTCTCCAGTATCTTAAGGATATAACAACT 864
Query 657 ACGTTTCCAAGCTTTGTGTTCCATTCTCAGGTTGAAGATACCTGA-AAAAACAAAAGCAT 715
|| ||||| |||||||||||||| || ||||| |||||||||||| |||||||| |||||
Sbjct 865 ACATTTCCGAGCTTTGTGTTCCACTCGCAGGTGGAAGATACCTGAGAAAAACAATAGCAT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5