BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950261

Length=482
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56050.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   248    3e-65
  AT5G56061.1 | Symbols:  | Pseudogene of AT5G56050 | chr5:227052...   176    2e-43


> AT5G56050.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
chloroplast; BEST Arabidopsis thaliana protein match is: Late 
embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein 
family (TAIR:AT4G26490.1); Has 1807 Blast hits to 1807 proteins 
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 
736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes 
- 339 (source: NCBI BLink). | chr5:22700962-22702116 REVERSE 
LENGTH=1155
Length=1155

 Score =  248 bits (134),  Expect = 3e-65
 Identities = 187/213 (88%), Gaps = 2/213 (1%)
 Strand=Plus/Plus

Query  253  TCTTCTTGCCTGTAAATCATATGGTTGAGCTCAGAAGACAAGTGGCAAGCAATATGATAG  312
            ||||||||||||||||||||||  |||||||||||||||||||| | ||||||| |||||
Sbjct  742  TCTTCTTGCCTGTAAATCATATACTTGAGCTCAGAAGACAAGTGACGAGCAATAGGATAG  801

Query  313  ATTATGAAATCATAAGTAAATTCACAGTGAAAGCTGTTCTTGGGATCATTCACTATTCGT  372
             ||||||||||| |||||| |||| ||| |||||| || ||||||| ||||| ||||| |
Sbjct  802  CTTATGAAATCAGAAGTAACTTCAGAGTCAAAGCTATTTTTGGGATGATTCATTATTCTT  861

Query  373  AT-TGGCTAAAAGGGAGTTGTCAGCTTCAGTTGACCAGTCCACCAGCCGGTAGCTTACTG  431
            || | |||| | |||| |||||||||||| |||| |||||||||||||||| ||||| | 
Sbjct  862  ATAT-GCTACACGGGATTTGTCAGCTTCAATTGAGCAGTCCACCAGCCGGTGGCTTAGTT  920

Query  432  TCTCGGAACTGCACTACAAAAAGATGGTGAAGA  464
            | |||||||||||||||||||||||||||||||
Sbjct  921  TATCGGAACTGCACTACAAAAAGATGGTGAAGA  953


> AT5G56061.1 | Symbols:  | Pseudogene of AT5G56050 | chr5:22705280-22705701 
REVERSE LENGTH=422
Length=422

 Score =  176 bits (95),  Expect = 2e-43
 Identities = 129/145 (89%), Gaps = 3/145 (2%)
 Strand=Plus/Plus

Query  100  CGGTTAATTTCGACG-T--TGATATGTTGTTGCAGTTGAATTTCACCAACCCAAACAAGA  156
            ||||| ||||||| | |  ||| ||||||||||||||||||||||||||  |||||||||
Sbjct  227  CGGTTTATTTCGATGATGGTGACATGTTGTTGCAGTTGAATTTCACCAAGTCAAACAAGA  286

Query  157  AACTAAGTGTGATGTTTGAGAAAGTTTCAGTAGAGCTCTGGTTTGCCGACGAAATGATCG  216
            ||||| |||||| ||||| |||| |||| |||||||||||||||||| ||||||||||||
Sbjct  287  AACTAGGTGTGAGGTTTGGGAAACTTTCCGTAGAGCTCTGGTTTGCCAACGAAATGATCG  346

Query  217  CCACACAAGGTGTCTTACCGTTTTC  241
            |||||||||||||||| || |||||
Sbjct  347  CCACACAAGGTGTCTTGCCATTTTC  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22957005179


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5