BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950262
Length=1006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56080.1 | Symbols: ATNAS2, NAS2 | nicotianamine synthase 2 ... 1535 0.0
AT5G04950.1 | Symbols: NAS1, ATNAS1 | nicotianamine synthase 1 ... 935 0.0
> AT5G56080.1 | Symbols: ATNAS2, NAS2 | nicotianamine synthase
2 | chr5:22711402-22712364 REVERSE LENGTH=963
Length=963
Score = 1535 bits (831), Expect = 0.0
Identities = 919/963 (95%), Gaps = 0/963 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATCGACTTATACAATCAAATCTCA 80
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1 ATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATGGACTTATACAACCAAATCTCA 60
Query 81 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCGGACAACTCGTATCC 140
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 61 AACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTCAGACAACTTGTGTCC 120
Query 141 ACGTGCTTACCTACAGACACAAACATCGATGTCACGGAGATACACGATGAAAAAGTCAAA 200
||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 ACGTGCTTACCAACGGACACGAACATCGATGTCACAGAGATACACGATGAAAAAGTCAAA 180
Query 201 GACGCGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 260
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GACATGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGTTATTTAGAGCAACAC 240
Query 261 TTTTCAACAATCTTAAGCTCTTTTGAAGACAACCCACTAAACCATTTACACATTTTTCCC 320
|||||| |||||||| ||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 241 TTTTCAGCAATCTTAGGCTCTTTTGAAGACAACCCTCTAAACCATTTACACATCTTCCCC 300
Query 321 TATTACAACAACTATATCAAGCTAGGAAAACTCGAATTCGATCTCCTAGCACAACACACA 380
||||||||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 301 TATTACAACAACTATCTCAAACTAGGCAAACTCGAATTCGATCTCCTATCTCAACACACA 360
Query 381 ACCCATGTCCCGACCAAAGTCGCTTTTATCGGTTCGGGTCCGATGCCACTTACATCCATC 440
||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 361 ACCCATGTCCCGACCAAAGTCGCCTTTATTGGTTCCGGTCCGATGCCACTTACTTCCATC 420
Query 441 GTCTTGGCCAAGTTCCATCTTCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 500
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTCTTGGCCAAGTTCCACCTCCCCAACACAACGTTCCACAACTTCGACATCGACTCACAC 480
Query 501 GCCAACACACTCGCTTCAAACCTCGTTTCTCACGATTCTGACCTCTCGAAACGCATGATT 560
||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||
Sbjct 481 GCCAACACACTCGCTTCAAACCTCGTTTCTCGTGATTCTGACCTTTCCAAACGCATGATT 540
Query 561 TTCCACACAACTGATGTGTTAAACGCTAAGGAAGGGTTAGACCAATACGATGTTATTTTC 620
||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||
Sbjct 541 TTCCACACAACTGATGTATTAAACGCTAAGGAGGGGTTAGACCAATACGATGTTGTTTTC 600
Query 621 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTGGAG 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 TTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAAGGTCAAAGCTATTGAGCATTTAGAG 660
Query 681 AAGCATATGGCTCCTGGAGCTGTGTTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 740
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCATATGGCTCCTGGAGCTGTGGTGATGCTAAGAAGTGCTCATGGTCTTAGAGCTTTC 720
Query 741 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGTATCCAATCGTTGACTCTTGTGATCTTAAAGGGTTTGAGGTGTTAACCATTTATCAT 780
Query 801 CCGTCCGATGATGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGGTCAAATGGA 860
||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 CCGTCTGACGACGTGGTTAATTCGGTGGTCATCGCACGTAAGCTTGGTGGTTCAAATGGA 840
Query 861 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCATGTAACTGCTCTAAGGTCCAC 920
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 841 GCTCGAGGCAGCCAGATCGGACGGTGTGTGGTTATGCCTTGTAATTGCTCTAAGGTCCAC 900
Query 921 GCGATCATGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTTTAGTGCCATCGAG 980
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 901 GCGATCTTGAACAATCGTGGTATGGAGAAGAATTTGATCGAGGAGTATAGTGCCATCGAG 960
Query 981 TAA 983
|||
Sbjct 961 TAA 963
> AT5G04950.1 | Symbols: NAS1, ATNAS1 | nicotianamine synthase
1 | chr5:1457645-1458890 REVERSE LENGTH=1246
Length=1246
Score = 935 bits (506), Expect = 0.0
Identities = 856/1021 (84%), Gaps = 39/1021 (4%)
Strand=Plus/Plus
Query 6 CCTCATAGTGTCGACATGGCTTGCGAAAACAACCTCGTTGTGAAGCAAATCATCGACTTA 65
|||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 38 CCTCATAGTGTCGATATGGCTTGCCAAAACAATCTCGTTGTGAAGCAAATCATCGACTTG 97
Query 66 TACAATCAAATCTCAAACCTCGAGAGCTTAAAACCATCCAAGAATGTCGACACTTTGTTC 125
||| | ||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct 98 TACGACCAAATCTCAAAGCTCAAGAGCTTAAAACCTTCCAAAAATGTCGACACTTTGTTC 157
Query 126 GGACAACTCGTATCCACGTGCTTACCTACAGACACAAACATCGATGTCACGGAGATACAC 185
||||||||||| |||||||||||||| || || ||||||||||||||||| | |||
Sbjct 158 GGACAACTCGTGTCCACGTGCTTACCCACGGATACAAACATCGATGTCAC--AAATATGT 215
Query 186 GATGAAAAAGTCAAAGACGCGAGATCTCATCTCATCAAGCTTTGTGGTGAAGCCGAAGGT 245
| |||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 216 G-TGAAGAAGTCAAAGACATGAGAGCTAATCTCATCAAGCTTTGTGGTGAAGCCGAAGGT 274
Query 246 TATTTAGAGCAACACTTTTCAACAATCTTAAGCTCTTTT---GAAGAC-AA--CCCACTA 299
||||||||||||||||| || ||||| || | ||||| |||||| || ||||||
Sbjct 275 TATTTAGAGCAACACTTCTCCACAATTTTGGGATCTTTACAAGAAGACCAAAACCCACTT 334
Query 300 AACCATTTACACATTTTTCCCTATTACAACAACTATATCAAGCTAGGAAAACTCGAATTC 359
||||||||||||| ||||| || ||| |||||| |||||||||| || ||||| |||
Sbjct 335 GACCATTTACACATCTTTCCTTACTACTCCAACTACCTCAAGCTAGGCAAGCTCGAGTTC 394
Query 360 GATCTCCT-AGCACAACACACAACCCATGTCCCGACCAA-AGTCGCTTTTATCGGTTCGG 417
|||||||| ||| |||||| ||| ||||||||| ||||| | | || || | |||||||
Sbjct 395 GATCTCCTGAGC-CAACACTCAAGCCATGTCCCCACCAAGATT-GCCTTCGTGGGTTCGG 452
Query 418 GTCCGATGCCACTTACATCCATCGTCTTGGCCAAGTTCCATCTTCCCAACACAACGTTCC 477
|||||||||| || ||||||||||| ||||||||||| || || |||||||| |||||||
Sbjct 453 GTCCGATGCCTCTCACATCCATCGTATTGGCCAAGTTTCACCTCCCCAACACGACGTTCC 512
Query 478 ACAACTTCGACATCGACTCACACGCCAACACACTCGCTTCAAACCTCGTTTCTCACGATT 537
||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 513 ACAACTTTGACATCGACTCACACGCAAACACACTCGCTTCAAACCTCGTCTCTCGCGACC 572
Query 538 CTGACCTCTCGAAACGCATGATTTTCCACACAACTGATGTGTTAAACGCTAAG-GAAGGG 596
| |||||||| ||||||||||| ||||||||||| || || ||||||| || |||||
Sbjct 573 CGGACCTCTCAAAACGCATGATCTTCCACACAACGGACGTACTAAACGC-AACCGAAGGC 631
Query 597 -TTAGACCAATACGATGTTATTTTCTTGGCAGCTCTTGTTGGGATGGATAAAGAGTCAAA 655
|| |||||||| || || ||||||| || || ||||| |||||||| |||||||||||
Sbjct 632 CTT-GACCAATATGACGTCGTTTTCTTAGCGGCGCTTGTAGGGATGGACAAAGAGTCAAA 690
Query 656 GGTCAAAGCTATTGAGCATTTGGAGAAGCATATGGCTCCTGGAGCTGTG-TTGATGCTAA 714
||||||||| || ||||| |||||||| || ||||||||||||||||| || |||||||
Sbjct 691 GGTCAAAGCCATCGAGCACTTGGAGAAACACATGGCTCCTGGAGCTGTTCTT-ATGCTAA 749
Query 715 GAAGTGCTCATGGTCTTAGAGCTTTCTTGTATCCAATCGTTGACTCTTGTGATCTTAAAG 774
| |||||||||| ||| ||||||||||| ||||||||||||||||| | |||||| ||||
Sbjct 750 GGAGTGCTCATGCTCTCAGAGCTTTCTTATATCCAATCGTTGACTCGTCTGATCTCAAAG 809
Query 775 GGTTTGAGGTGTTAACCATTTATCATCCGTCCGATGATGTGGTTAATTCGGTGGTCATCG 834
| ||| | | || ||||| |||||||| ||||||| |||||||| ||||| || ||||
Sbjct 810 GCTTTCAACTCTTGACCATCTATCATCCAACCGATGACGTGGTTAACTCGGTTGTGATCG 869
Query 835 CACGTAAGCTTGGTGGGTCAAATGGA-GCTCGAGGCAGCCAGATCGG-ACG-GTG--TG- 888
|||||||||| ||||| || | | || || || | | || || || ||| ||
Sbjct 870 CACGTAAGCTCGGTGG-TCCGACC-ACGCCCG-GG--GTTA-AT-GGTACTCGTGGATGC 922
Query 889 -TGGTTATGCCATGTAACTGCTCTAAGGTCCACGCGATCATGAACAATCGTGGTATGGAG 947
|| ||||||| ||||||||||| ||| | ||||||||||||||||| ||||||| ||
Sbjct 923 ATGTTTATGCCTTGTAACTGCTCCAAGATTCACGCGATCATGAACAACCGTGGTA---AG 979
Query 948 AAGAATTTGATCGAGGAGTTTAGTGCCATCGAGTAAACAAGTAACTACATAA--CACATC 1005
|||||| ||||||||||||||||||||||||||||||||| || || |||| ||||||
Sbjct 980 AAGAATATGATCGAGGAGTTTAGTGCCATCGAGTAAACAAACAATTA-ATAAAACACATC 1038
Query 1006 T 1006
|
Sbjct 1039 T 1039
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49279698207
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5