BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950263
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:2... 2346 0.0
> AT5G56090.1 | Symbols: COX15 | cytochrome c oxidase 15 | chr5:22714518-22716835
FORWARD LENGTH=1720
Length=1720
Score = 2346 bits (1270), Expect = 0.0
Identities = 1372/1421 (97%), Gaps = 7/1421 (0%)
Strand=Plus/Plus
Query 2 AAACCCTAGAGAGATAGAGATGTTTCGAGCGGTGGGATCGGCTCTCAAGAGGAACAAAGA 61
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 98 AAACCCTAGAGAGATAGAGATGTTTCGGGCGGTTGGATCGGCTCTGAAGAGGAACAAAGA 157
Query 62 AGCGTTTAATGGAATCGCTCGAGGATTCACCACTTCGTCTCATCGAGTTTTCACTTCTAA 121
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGCGTTTAATGGAATTGCTCGAGGATTCACCACTTCGTCTCATCGAGTTTTCACTTCTAA 217
Query 122 CATTACAGCTGCTACTGTAACCTCTGCTTCGTCTTCTTCTCTAGCTGGAAACTCCTTCTA 181
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 218 CATTACAGCTGCTTCTGTAACCTCTGCTTCGTCTTCTCCTTTAGCTGGAAACTCCTTCTA 277
Query 182 TGGCTTGCGATCTCTTCTCAAGGGTCAAAATGCTTCAATGTTTAGGAAGATGTCAACTGT 241
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 278 TGGCTTGCGATCTCTGCTCAAGGGTCAAAATGCTTCAATGTTTAGGAGGATGTCAACTGT 337
Query 242 AGCCTCGATTAGCTCAGAGAGTAAAGAGGGTTTGAAGCATCTTGTCACTGGAGGACCTCA 301
||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 338 AGCGTCGATAAGCTCAGAGAGTAAAGAGGGTTTGAAGCTTCTTGTCACTGGAGGACCTCA 397
Query 302 AGCT-AGGAAATGGGTTGGGATATGGCTTTTTGGTTCTGCTACTTGGGTTTTCAGCATGG 360
|||| | |||||||||||| || |||||||||||||| ||| ||||||||||||||||||
Sbjct 398 AGCTCA-GAAATGGGTTGGAATTTGGCTTTTTGGTTCGGCTGCTTGGGTTTTCAGCATGG 456
Query 361 TTGTACTAGGCGGAGTAACCCGATTTACTCGATCTGGTTTATCGATGACTGATTGGAAAT 420
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 457 TTGTACTTGGCGGTGTAACCCGATTAACTCGATCTGGTTTATCGATGACTGATTGGAAAT 516
Query 421 TCACTGGTGAATTCCCTCCTCTGTCAGATGAAGCTTGGGTTAAGGAGTTTGAGAAATATA 480
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 517 TTACTGGTGAATTCCCTCCTCTGTCAGATGAAGCTTGGGCTAAGGAGTTTGAGAAATATA 576
Query 481 AGCAGTCGCCTGCATACAAGCGTGTGAACAAAGGGATGAATCTTGAAGATTTTAAGTTCA 540
||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 577 AGCAGTCACCTGAATATAAGCGTGTGAACAAAGGGATGAACCTTGAAGATTTTAAGTTCA 636
Query 541 TATATTGGATGGAGTATGCTCATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 TATATTGGATGGAGTATGCTCATCGAATGTGGGGAAGAGGATTGGGAATCATGTTTGCTT 696
Query 601 TGCCGTTTTCTTATTTTCTGCGGAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCT 660
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 697 TGCCGTTTTCTTATTTTCTGCGTAAAGGGTATATTACTCTACGTCTTGGAGTTCAGCTCT 756
Query 661 CTGGTTTATTTGCGCTTGGTGCTGGACAAGGTTTCATTGGTTGGTGGATGGTTAAAAGTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 CTGGTTTATTTGCGCTTGGTGCTGGACAAGGTTTCATTGGTTGGTGGATGGTTAAAAGTG 816
Query 721 GTTTAGAGGAGCCGCCGTCTGAATATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAG 780
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 817 GTTTAGAGGAGCCACCGTCTGAGTATTCTCAACCGAGGGTAAGCCCATACCGTCTTGCAG 876
Query 781 CTCACCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CTCACCTGACCTCAGCTTTTGCCATTTATTGTGGACTTTTCTGGACCGCTCTCTCTGTTG 936
Query 841 TTATGCCTGAACCACCAGCTGAGTCACTGGCTTGGGTTCGGGGAGCAGCTAAAGTGAAGA 900
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 937 TTATGCCTGAACCACCAGCTGAGTCACTGGCTTGGGTTCGCGGAGCAGCTAAAGTGAAGA 996
Query 901 AGCTTGCATTACCAGTAAGCTTAATTGTTGGTATCACTGCAATTTCAGGAGCATTTGTTG 960
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 997 AGCTTGCATTACCAGTAAGCTTGATTGTTGGTATCACTGCAATTTCAGGAGCATTTGTTG 1056
Query 961 CTGGAAATGATGCTGGTCGTGCATTCAACACATT-CCCAAAAATGGGTGACACATGGATC 1019
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1057 CTGGAAATGATGCTGGTCGTGCATTCAACACATTTCCCAAAA-TGGGTGACACATGGATC 1115
Query 1020 CCTGATAATATATTTGAGATGAAACCACTTTTACGCAATTTTTTCGAGAACACAGCAACT 1079
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1116 CCAGATAATATATTTGAGATGAAACCACTTTTACGCAACTTTTTCGAGAACACAGCAACT 1175
Query 1080 GTTCAGCTTGATCATCGCCTTCTTGCAACCACAACGCTAATAGCAATTGGAACAATGTGG 1139
||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||
Sbjct 1176 GTTCAGCTTGATCATCGCCTTCTGGCAACCACAACATTAATCGCAATCGGAACAATGTGG 1235
Query 1140 TGGTTCACTAGGAAGCTAGACATACATCCAGCCGTTAAAGCTTTGATCGGAAGTACTGTT 1199
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1236 TGGTTCACAAGGAAGCTAGACATACATCCAGCTGTTAAAGCTTTGATCGGAAGTACTGTT 1295
Query 1200 GGAATGACTGCTGTTCAGGTGACATTAGGTGTATCAACGCTTCTGAGCTATGTTCCGGTT 1259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1296 GGAATGACTGCTGTTCAGGTGACATTAGGTGTATCAACGCTTCTGAGTTATGTTCCGGTT 1355
Query 1260 TCACTAGGAAGTGCACACCAAGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTC 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 TCACTAGGAAGTGCACACCAAGCAGGAGCTTTAACACTTCTCACTTTGATGCTACTTCTC 1415
Query 1320 AATCACACTCTTCGGAGGCCATCGCCTTCTCTTCTCAAATCCCTTCCACAAGTTGCTAAA 1379
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1416 AATCACACTCTTCGGAGGCCATCACCTTCTCTTCTCAAATCTCTTCCACAAGTTGCTAAA 1475
Query 1380 TCAAATTTCAGCTAAGCAGCCCTCTTCACCAAAATCTTTCC 1420
||||||||||||||||| || |||||||||||||||||||
Sbjct 1476 TCAAATTTCAGCTAAGC--CC-TCTTCACCAAAATCTTTCC 1513
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5