BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950267

Length=476
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56100.1 | Symbols:  | glycine-rich protein / oleosin | chr5...   634    0.0  


> AT5G56100.1 | Symbols:  | glycine-rich protein / oleosin | chr5:22717115-22717751 
FORWARD LENGTH=637
Length=637

 Score =  634 bits (343),  Expect = 0.0
 Identities = 402/430 (93%), Gaps = 6/430 (1%)
 Strand=Plus/Plus

Query  21   ACTAGTATGGAGAATCAT---GG-A-G-GAAGAAGAGACATAGCCATAACCGATGGAGAA  74
            |||| ||||||||||| |   || | | ||||||||||||||||||||||||||||||||
Sbjct  1    ACTACTATGGAGAATCCTGGAGGAAGGAGAAGAAGAGACATAGCCATAACCGATGGAGAA  60

Query  75   AGGAGGACTGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTAGCAGTGGTCGGGCCG  134
            || | ||| ||||||||||||||||||||||||||||||||||| |||||||| || |||
Sbjct  61   AGAACGACCGGTTCTTCGGTTGTGGCTGCAACCGTAGCAGCTGTTGCAGTGGTAGGACCG  120

Query  135  CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CTTTTTGGTCTGATGAGTTTCAGCTTTGTGGCGACGGTGACTCTGTTTCTGATCGCTTCT  180

Query  195  CCATTGCTGCTGACATTTGCTCCAGTTTTTATGGTGATGGTAGCGGTTCTTGTGGCGGCT  254
            ||||||||||||| ||||||||||| ||||||||| | |||||||||||||||| |||||
Sbjct  181  CCATTGCTGCTGATATTTGCTCCAGCTTTTATGGTAACGGTAGCGGTTCTTGTGTCGGCT  240

Query  255  ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCTGCTTTGGTATGT  314
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  241  ATGGTTGGTGTTGGGGTAGCTGCAGCCATGTGGATGATGGGAATAGCCGCTTTGGTATGT  300

Query  315  TGTGGCCGAGAGATTGGTATTGAAACCGGAGTGGCTGGGAGGATGGTTGAGTCGGTTGTG  374
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct  301  TGTGGCCGAGAGATTGGTATTGAAACCGGACTGGCTGGGAGGATGGTTGAGTCGGTGGTG  360

Query  375  AGAGAATTAGGTTATGGTCGGAGTCGTTACTTGCGAAACAAATCAGAGTATGGTTATTCT  434
            |||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||| 
Sbjct  361  AGAGAATTAGGTTACGGTCGGAGTCGTTACTTGCGAGACAAATCAGAGGATAGTTATTCA  420

Query  435  TCTTCTTCTC  444
             |||||||||
Sbjct  421  ACTTCTTCTC  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22655600297


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5