BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950270
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 rep... 1661 0.0
> AT5G56130.1 | Symbols: TEX1, AtTEX1, THO3 | Transducin/WD40 repeat-like
superfamily protein | chr5:22722482-22725095 REVERSE
LENGTH=1251
Length=1251
Score = 1661 bits (899), Expect = 0.0
Identities = 957/985 (97%), Gaps = 3/985 (0%)
Strand=Plus/Plus
Query 4 GAAG-GTTGAGAA--CAAAAATGGAGGAGACGACGATTCCTTTCAAGAGCTTACATAGCA 60
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAAGAGTTGAGAATTAAAAAATGGAGGAGACGACGATTCCTTTCAAGAGCTTACATAGCA 70
Query 61 GAGAATATCAAGGTCACAAGAAGAAGGTACATTCTGTAGCTTGGAATTCTAATGGAACAA 120
|||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 71 GAGAATATCAAGGTCATAAGAAGAAGGTACATTCAGTAGCTTGGAATTCGAATGGAACAA 130
Query 121 AGCTTGCTTCGGGTTCTGTTGATCAAACGGCTCGCATTTGGAACATTGAACCTCACGGTC 180
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 131 AGCTTGCTTCGGGTTCTGTTGATCAAACGGCTCGCATTTGGAATATCGAACCACACGGTC 190
Query 181 ATAGTAAGGCTAAGGACCTTGAACTAAAGGGACATACTGATAGTGTGGATCAGCTATGTT 240
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 191 ATAGCAAGGCTAAGGACCTTGAGCTAAAGGGTCATACTGATAGTGTGGATCAGCTATGTT 250
Query 241 GGGACCCCAAACATTCAGATCTTGTTGCTACTGCCTCTGGTGATAAAAGCGTTCGTCTCT 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 251 GGGATCCCAAACATTCAGATCTTGTTGCTACTGCCTCTGGTGATAAAAGCGTTCGTCTTT 310
Query 301 GGGATGCTCGCAGTGGAAAATGCACACAGCAGGCCGAACTTAGTGGAGAGAATATAAACA 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 311 GGGATGCTCGCAGTGGAAAATGCACACAGCAGGTAGAACTTAGTGGAGAGAATATAAACA 370
Query 361 TCACCTACAAACCTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAGCTTACCA 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 371 TCACCTACAAACCTGACGGGACACATGTAGCTGTTGGTAATAGGGATGATGAGCTTACAA 430
Query 421 TTCTGGATGTCCGTAAGTTTAAACCTCTACACAGACGCAAATTCAATTATGAGGTTAATG 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 431 TTCTGGATGTCCGTAAGTTTAAACCTCTACACAGGCGCAAATTCAATTATGAGGTTAATG 490
Query 481 AGATTGCTTGGAACATGCCAGGAGATTTTTTCTTCTTGACTACTGGACTTGGCACTGTTG 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGATTGCTTGGAACATGCCTGGAGATTTTTTCTTCTTGACTACTGGACTTGGCACTGTTG 550
Query 541 AAGTTCTTTCATATCCGTCTCTTAAACCACTTGACACTCTCACAGCCCACACAGCCGGGT 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 AAGTTCTTTCATATCCATCTCTTAAACCACTTGACACTCTCACAGCCCACACAGCCGGGT 610
Query 601 GTTATTGTATTGCAATTGATCCTAAAGGGAGATATTTTGCTGTCGGGAGTGCGGATTCCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTTATTGTATTGCAATTGATCCTAAAGGGAGATATTTTGCTGTCGGGAGTGCGGATTCCT 670
Query 661 TAGTCAGCCTTTGGGATATCTCAGACATGCTTTGTTTGAGAACATTTACCAAACTTGAGT 720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TAGTAAGCCTTTGGGATATCTCAGACATGCTTTGTTTGAGAACATTTACCAAACTTGAGT 730
Query 721 GGCCCGTCAGAACAATAAGCTTCAACTATTCGGGAGAGTATATTGCTTCAGCCAGTGAAG 780
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GGCCAGTCAGAACAATAAGCTTCAACTATTCGGGAGAGTATATTGCTTCAGCCAGTGAAG 790
Query 781 ATTTATTCATTGATATTGCTAATGTCCAAACCGGGCGGACGGTGCATCAGATTCCATGTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 ATTTATTCATTGATATTGCTAATGTCCAAACCGGGCGGACGGTGCATCAGATTCCATGTC 850
Query 841 GGGCTGCCATGAACAGTGTCGAGTGGAATCCCAAATACAATTTACTTGCATATGCAGGTG 900
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GGGCAGCCATGAACAGTGTTGAGTGGAATCCCAAATACAATTTACTTGCATATGCAGGTG 910
Query 901 ATGACAAGAATCCCAAGTATAATACTGATGAAGGTGTTTTCCGGATATTTGGTTTTGAGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATGACAAGAATCCCAAGTATAATACTGATGAAGGTGTTTTCCGGATATTTGGTTTTGAGA 970
Query 961 GCTCGTAGAAACAGAACACTGCATC 985
|||||||| |||||| ||||| |||
Sbjct 971 GCTCGTAGGAACAGAGCACTGAATC 995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5