BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950278
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56210.1 | Symbols: WIP2 | WPP domain interacting protein 2 ... 1727 0.0
> AT5G56210.1 | Symbols: WIP2 | WPP domain interacting protein
2 | chr5:22750555-22752732 REVERSE LENGTH=2004
Length=2004
Score = 1727 bits (935), Expect = 0.0
Identities = 1088/1160 (94%), Gaps = 17/1160 (1%)
Strand=Plus/Plus
Query 510 GAG-AGTACAATGGGTCATTCTTGGGACAAACATAGAGGGAA-GTATTCGGGTGGGAAGA 567
||| ||||||||| ||||||||||||||||||||||||| || || |||||||||||||
Sbjct 768 GAGTAGTACAATGAGTCATTCTTGGGACAAACATAGAGGAAAGGT-CTCGGGTGGGAAGA 826
Query 568 GTGTGATTAGTTCGGGTGATAGTAGTCAACAAAGGAAGAGTAATGTAGAGAAGAGTAAGA 627
|||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 827 GTGTGATTAGTTCGGGGGATAGTAGTCAACAAAGGAAGAGTAGTGTAGAGAAGAGTAATA 886
Query 628 AACTTAGAGGAGAAAGGATCAAAATTGAGAAGGAAAACTCTCATTCCAGTATGGAATCTG 687
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 887 AACTTAGAGGAGAAAGGATCAAAATTGAGAAGGAAAACTCTCATTCCAGCATGGAATCTG 946
Query 688 CTGACTCAAGAAGCTCCAACTTTGTGTTTATGCAGGGTGCTTCCTATAGTTTGAGTAGCA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 CTGACTCAAGAAGCTCCAACTTTGTGTTTATGCAGGGTGCTTCCTATAGTTTGAGTAGCA 1006
Query 748 GAGAACAGGGCGGAAGAAGAATGATGGATTACGACGAAGAAAATAGTGATCATGACGCAC 807
||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1007 GAGAACAAGGCGGAAGAAGAATGATGGATTATGACGATGAAAATAGTGATCATGACGCAC 1066
Query 808 ATACTTCGAACAGAAAGGATAACGTGGGAGACGAAGAAGAAGAAGGAACCGAAGATTATT 867
|||||||||| |||||||||||||| ||| | ||||||||||||| ||| ||||| ||||
Sbjct 1067 ATACTTCGAAGAGAAAGGATAACGT-GGA-A-GAAGAAGAAGAAGAAACAGAAGACTATT 1123
Query 868 CACAAGGAGACTCTGTTGAAGAGTCCCAAAGT-AAGAACAATGGTTCATCAGACAATCTG 926
|||||||||||| |||||||||||| |||| | |||| ||||||||||||||||||||||
Sbjct 1124 CACAAGGAGACTGTGTTGAAGAGTCTCAAA-TCAAGAGCAATGGTTCATCAGACAATCTG 1182
Query 927 GATCCATTAATAGTGGCCTTCAACAGTTTCCAGACTTTGCAAGAAGCCCTCCAAAAAGAA 986
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GATCCATTAATAGTAGCCGTCAACAGTTTCCAGACTTTGCAAGAAGCCCTCCAAAAAGAA 1242
Query 987 CTTCAAAATTTCCAAGAGCTTGGG--A-AAGAACCTATAACATCACCACATGATGGAGGA 1043
|||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||
Sbjct 1243 CTTCAAAAATTCCAAGAGCTTGGGAAAGAAGAACCTATAACATCACTGCATGATGGAGGA 1302
Query 1044 GAAAGTAGCAGTTGCATACATGTGGGACACGAACGAGCTAGTGAAGCAAGTTCTTCTCAC 1103
||||| |||||||||||||| | ||||||||| |||||||||||||||| |||||| ||
Sbjct 1303 GAAAGCAGCAGTTGCATACACGCAGGACACGAAGGAGCTAGTGAAGCAAGCTCTTCTTAC 1362
Query 1104 CAGTTTGGGTCTGAAAAGATGGGAGAAATAGG-ATTAACTTCTCTAGATTCCGAGATACT 1162
| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1363 CGGTTTGGGTCTGAAAAGATGGGAGAAAT-GGAATTAACTTCTCTAGATTCCGAGATACT 1421
Query 1163 AAACCTGGTGAACAATGTAGAGCATCTGGAGATCAAACTAGAAGAAGCAAAGAGTATTCT 1222
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1422 AAACCTGGTGAACAATGTAGAGCATCTGGAGATCAAACTAGAAGAAGCAAAGCGTATTCT 1481
Query 1223 AAAGGTTAAAGAAACACAAATACGTGAACTCGAATCTACCATAAGCGTTTCAAAGACGCA 1282
||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 1482 CGAGGTTAAAGAAACACAAATCCGTGAACTCGAATCTACCATAAACGTTTCAGAGACGTG 1541
Query 1283 TAATGGAGGAACAGAGATCGGGATCGAAGAAATCTTCCAGCAAAAGATGGAGGCAGAGAT 1342
||| |||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 1542 TAACGGAGGAACAGAGATCGGGATAGAAGACATCTTCCAGCAAAAGGTGGAGGCAGAGAT 1601
Query 1343 TGAATATATCATATTCTCAAGATCAGTGGGAAACCTAAAGAGACGGATCAAACTGATCGA 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1602 TGAATATATCATATTCTCAAGATCAGTGGGAAACCTAAAGAGACGGATCAAACTGATTGA 1661
Query 1403 AGAAGAGAAGACATTGGGGTTATCAAAGCTTGAAAAAGCAGAAACAAAAGCTGAGAATCT 1462
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1662 AGAAGAGAAGACATTGGGGCTATCAAAGCTTGATAAAGCAGAAACAAAAGCTGAGAATCT 1721
Query 1463 AAAGAATCAAGCTCAAGATTTACAAAACCATTGTGTAGCGATCACAGAGATTCAAGAAGT 1522
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1722 AAAGAATCAAGCTCAAGATTTACAAAACCATTGTGTAGAGATCACAGAGATTCAAGAAGT 1781
Query 1523 GGAGTTCTTGAAGAAGAGAGTATATAAGACCACTAGATGTCTTCTTCTACAGTT-GTGCT 1581
||||| | |||||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 1782 GGAGTGCCTGAAGAAGAGAGCATTTAAGACCACTAGATGTCTTCTTCTACAGTTAG-GCT 1840
Query 1582 TGCTTTTTATGCTGTATTATT-TCATGTTACCAGAGTCGGAGATTGATGTTCCCACATGA 1640
|||| ||||| |||||||||| || |||||||||| ||||||||| |||||||||||||
Sbjct 1841 TGCTCTTTATACTGTATTATTCTC-TGTTACCAGAACCGGAGATTGCTGTTCCCACATGA 1899
Query 1641 TAGTTTTGTTTGATGGAATC 1660
||||||||||||||||||||
Sbjct 1900 TAGTTTTGTTTGATGGAATC 1919
Score = 503 bits (272), Expect = 2e-141
Identities = 323/348 (93%), Gaps = 1/348 (0%)
Strand=Plus/Plus
Query 128 TGATCTTGATAAAGAGGTGAATTCACCGGTTGAGATTTCTCATCTTATTTCCAAAGGATT 187
|||||||||||||||| |||||||||||||||||| ||||| |||||| || ||||||||
Sbjct 432 TGATCTTGATAAAGAGTTGAATTCACCGGTTGAGACTTCTCCTCTTATATCAAAAGGATT 491
Query 188 TGGTTTAAGAAAATGGAAGAGGAGGATAAGGAGAGATCTTGTTAAGGATGATACTTCTGT 247
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 492 TGGTTTAAGAAAATGGAAGAGGAGGTTAAGGAGAGATCTTGTTAAGGATGATACTTCTGT 551
Query 248 GAATATGGAGAACAGTAAAGTTCTGAAGAGGGTGTTGTCGGGGTTAGTTGATCCGAATGC 307
|| ||||||||| ||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 552 GAGTATGGAGAATAGTAAAGCTCTGAAGAGGGTGTTGTCAGGATTAGTTGATCCGAATGC 611
Query 308 TAAACACATGCATTTGCCGGGACCGGATGTTAGACAAGATAGTGTTGGTTCGGTTGGCTC 367
|||||| ||||||||||| ||||| || ||||||||||||||||||||||| ||||||||
Sbjct 612 TAAACAAATGCATTTGCCAGGACCTGAAGTTAGACAAGATAGTGTTGGTTCTGTTGGCTC 671
Query 368 GGTGAATAGTGTGGTTGGTTTTGCAATAGGTGGGGATAGTCATGGCAATGGTCTTGCTTT 427
||||||||||||||||||||||| ||| |||||||| ||| |||||||||||||||||||
Sbjct 672 GGTGAATAGTGTGGTTGGTTTTGTAATGGGTGGGGAGAGTTATGGCAATGGTCTTGCTTT 731
Query 428 TGCAGCTGGCGTGGATTCGGATAATAGTGAGGATTGGAGTAGTA-AAT 474
||||||||| || ||||||||||| ||||||||| ||||||||| |||
Sbjct 732 TGCAGCTGGTGTTGATTCGGATAACAGTGAGGATCGGAGTAGTACAAT 779
Score = 126 bits (68), Expect = 6e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 5 TTTTGTACCCTCAGTCATGGATTTGGAGAGTGAAAGCTCTGTTCTTGAATCTGTTGAAGA 64
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTTTGTGGCGTC-GTCATGGATTTGGAGAGTGAAAGCTCTGTTCTTGAATCTGTTGAAGA 413
Query 65 TAATAATGGTTTGATTGGTGA 85
|||||||||||||||||||||
Sbjct 414 TAATAATGGTTTGATTGGTGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5