BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950280
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56230.1 | Symbols: PRA1.G2 | prenylated RAB acceptor 1.G2 |... 774 0.0
> AT5G56230.1 | Symbols: PRA1.G2 | prenylated RAB acceptor 1.G2
| chr5:22758768-22759371 REVERSE LENGTH=604
Length=604
Score = 774 bits (419), Expect = 0.0
Identities = 526/578 (91%), Gaps = 6/578 (1%)
Strand=Plus/Plus
Query 1 GGAAAACTCGCCGGAAGAATATGACTCCTCCTCCTCCGACAACAACCTACACATCAATTC 60
|||||||||||||| || | ||||||||| ||||||| ||| |||||||| ||||||||
Sbjct 26 GGAAAACTCGCCGGGAG-A-ATGACTCCTTCTCCTCCTCCAATAACCTACATATCAATTC 83
Query 61 CACTTCCTACCGGCGATGTCATCTCTCGATCAATCCATAATCTCACTTCCGCTATCTCTC 120
| ||||||||| ||| ||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 84 CGCTTCCTACCAACGACGTCGTCTCACGATCAATCCATAATCTCACTACCGCTATCTCTA 143
Query 121 GCCACCGTCCCTGGTCAGAACT-AGTCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTC 179
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 144 GCCACCGTCCCTGGTCAGAACTCA-TCTTCTCCGGCGATTTCTCTCTCCCGGAGAGCTTT 202
Query 180 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTCTTCGTCAACTACACGATC 239
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 203 TCCTCTCTTCTCCTCCGATCAAAGACGAATTTCAACTACTTTTTCGTCAACTACACTATC 262
Query 240 GTCGTCGCCACTTGCGCAGCGTTCGCTCTCATCACAGCTAGTCCCGTCGCGTTAATCGTC 299
||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 263 ATCGTCTCCACGTGTGCAGCGTTCGCTCTCATCACAGCTAGTCCCGTCGCTTTAATCGTC 322
Query 300 GTCGGCGTAATCATCGTTTTGTGGCTTCTCTTTCACTTCTTCAGAGAAGATCCACTTATT 359
|| |||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 323 GTTGGCGCAATCATCGCCTTGTGGCTTATCTTTCACTTTTTCAGAGAAGATCCACTTATT 382
Query 360 CTCTGGAGCTTTCAGGTCGGTGATCGTACGGTGGTGTTGTTTCTAGTCCTGGCTTCCGTT 419
|||||||||||||| |||||||||||||||||| |||||||||||||| | |||||||||
Sbjct 383 CTCTGGAGCTTTCAAGTCGGTGATCGTACGGTGTTGTTGTTTCTAGTCTTAGCTTCCGTT 442
Query 420 TGGGCCGTATGGTTCACTAGCTCCGCCGTGAACTTAGCGGTTGGTGTCGGCGTTGGCTTG 479
||||| |||||||||||| |||||||||||| ||||| |||||||| |||||||||||
Sbjct 443 TGGGCTATATGGTTCACTAACTCCGCCGTGAATTTAGCTGTTGGTGTTAGCGTTGGCTTG 502
Query 480 CTATTGGGCATTACTCACTCTGTTCTT-AGAAACTCTGATGAGCTTTTCCTTGAGGAAGA 538
|||||| |||||| |||| | || ||| |||||||| |||||||||||||||||||||||
Sbjct 503 CTATTGTGCATTATTCACGCCGT-CTTTAGAAACTCCGATGAGCTTTTCCTTGAGGAAGA 561
Query 539 TGATGCTGTTAACGGAGGCTTGATCGGGCCTAATCTCC 576
||||||| |||||||||||||||||||| |||||||||
Sbjct 562 TGATGCTATTAACGGAGGCTTGATCGGGTCTAATCTCC 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28934868672
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5