BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950284
Length=2101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56270.1 | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protei... 3267 0.0
> AT5G56270.1 | Symbols: WRKY2, ATWRKY2 | WRKY DNA-binding protein
2 | chr5:22779693-22783268 FORWARD LENGTH=2798
Length=2798
Score = 3267 bits (1769), Expect = 0.0
Identities = 1993/2101 (95%), Gaps = 15/2101 (1%)
Strand=Plus/Plus
Query 3 CAAATTCTTTGATCCTAAATGGCTGGTTTTGATGAAAATGTTGCTGTAATGGGAGAATGG 62
||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 586 CAAATTCTTGGATACTAAATGGCTGGTTTTGATGAAAATGTTGCTGTGATGGGAGAATGG 645
Query 63 GTGCCTCGTAGTCCTAGTCCCGGGACTCTTTTCTCCTCAGCGATTGGAGAAGAGAAGAGC 122
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 646 GTGCCTCGTAGTCCTAGTCCCGGGACACTTTTCTCCTCTGCTATTGGAGAAGAGAAGAGC 705
Query 123 TCGAAACGTGTACTCGAAAGAGAGCTATCTTTGAATCATGGGCAAGTTATTGGTTTAGAA 182
||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 706 TCGAAACGTGTTCTTGAAAGAGAGTTATCTTTGAATCATGGTCAAGTTATTGGTTTAGAA 765
Query 183 GAAGACTCTACTGGTAATCATAACAAGGATTCTTCACAAACCAACGTTTTTCGAGGTGGT 242
|||||| ||| | ||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 766 GAAGACACTAGTAGTAATCATAACAAGGATTCTTCACAAAGCAATGTTTTTCGAGGTGGT 825
Query 243 CTCAGCGAAAGAATTGCTGCAAGAGCTGGATTTAATGCTCCGAGGTTAAACACTGAGAAT 302
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 826 CTCAGTGAAAGAATTGCTGCAAGAGCTGGATTTAATGCTCCAAGGTTGAACACTGAGAAT 885
Query 303 ATCCGTTCTAACAACGACTTTACCATTGACTCGAGTCTTCGGTCTCCTTGCTTAACCATC 362
||||| | |||| ||||||| |||||||||| | ||||| ||||||||||||||||||
Sbjct 886 ATCCGCACCAACACCGACTTTTCCATTGACTCTAACCTTCGATCTCCTTGCTTAACCATC 945
Query 363 TCTTCTCCTGGCCTTAGCCCTGCGACACTCTTGGAATCTCCTGTTTTCCTTTCTAACCCA 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 946 TCTTCTCCTGGCCTTAGCCCTGCAACACTCTTGGAATCTCCTGTTTTCCTTTCTAACCCA 1005
Query 423 TTGGCTCAACCTTCTCCAACTACCGGGAAATTTCCATTTCTTCCTGGTGTTAACGGTAAT 482
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1006 TTGGCTCAACCTTCTCCAACTACCGGGAAATTTCCATTTCTTCCTGGTGTTAATGGTAAT 1065
Query 483 GCATTGTCTTCTGATAAAGCGAAAGACGAGTTCTTTGATGATATTGGAGCATCTTTCACC 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1066 GCATTGTCTTCTGAGAAAGCGAAAGACGAGTTCTTTGATGATATTGGAGCATCATTCAGC 1125
Query 543 TTCCATCCTGTTTCAAGATCATCTTCCTCTTTCTTCCAAGGCACAACAGAGATGATGTCA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TTCCATCCTGTTTCAAGATCATCTTCCTCTTTCTTCCAAGGCACAACAGAGATGATGTCA 1185
Query 603 GTTGATTATGGTAACTACAACAGTAGATCTTCTTCTCATCAATCCGCAGAAGATGTAAAA 662
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1186 GTTGATTATGGTAACTACAACAATAGATCTTCTTCTCATCAATCCGCAGAAGAAGTAAAA 1245
Query 663 CCCGGCTCTCAAAACATAGAAAGCTCCAATCTTTATGGGATTGAAACTGACAATCAAAAT 722
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CCTGGCTCTGAAAACATAGAAAGCTCCAATCTTTATGGGATTGAAACTGACAATCAAAAC 1305
Query 723 GGGCAGAACAAGACATCTGATGTCACTACAAACACCAGTCTTGAAACCGTGGATCATCAA 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 GGGCAGAACAAGACATCTGATGTCACTACAAACACCAGTCTTGAAACCGTGGATCATCAA 1365
Query 783 GAGGAAGAAGAAGAGCAAAGACGTGGTGATTCAATGGTTGGTGGTGCGCCTGCAGAGGAT 842
||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 1366 GAGGAAGAAGAAGAGCAAAGACGCGGTGATTCGATGGCTGGTGGTGCGCCTGCAGAGGAT 1425
Query 843 GGATATAACTGGAGGAAATACGGACAAAAGTTAGTTAAAGGAAGTGAGTACCCGCGAAGC 902
|||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||
Sbjct 1426 GGATATAACTGGAGGAAATACGGACAAAAGTTGGTCAAAGGAAGTGAGTATCCGCGAAGC 1485
Query 903 TATTACAAGTGCACAAACCCGAATTGTCAGGTGAAGAAGAAAGTTGAGAGATCAAGGGAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 TATTACAAGTGCACAAACCCGAATTGTCAGGTGAAGAAGAAAGTTGAGAGATCAAGGGAA 1545
Query 963 GGTCACATCACAGAGATTATATACAAAGGAGCTCATAATCACTCT-AAACCTCCACCGAA 1021
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 1546 GGTCACATCACAGAGATTATATACAAAGGAGCTCATAATCA-TCTTAAACCTCCACCTAA 1604
Query 1022 TCGCCGCTCAGGGATGCAAGTAGATGGAACTGAACAAGTTGAACAACAAAAACAACAACA 1081
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1605 TCGCCGCTCAGGGATGCAAGTAGATGGAACTGAACAAGTTGAACAACAA---CAACAACA 1661
Query 1082 GAGAGATTCTGCTGCAACGTGGGTTAGTTGTAATAACACTCAACAACAAGGTGGAAGCAA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GAGAGATTCTGCTGCAACGTGGGTTAGTTGTAATAACACTCAACAACAAGGTGGAAGCAA 1721
Query 1142 TGAGAACAATGTCGAAGAGGGATCTACGGGATTCGAATATGGAAACCAATCTGGATCGAT 1201
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||
Sbjct 1722 TGAGAACAATGTCGAAGAGGGATCTACGAGATTCGAGTATGGAAACCAATCTGGATCAAT 1781
Query 1202 TCAAGCTCAAAATGGAGGTCAATACAAGTCAGGCGATGCTGTGGTTGTGGTTGATGCTTC 1261
||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||
Sbjct 1782 TCAAGCTCAAACCGGAGGTCAATACGAGTCAGGTGATCCTGTGGTTGTGGTTGATGCTTC 1841
Query 1262 ATCGACATTCTCTAACGATGAAGATGAAGATGATCGAGGGACACATGGAAGTGTTTCTAT 1321
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1842 TTCAACATTCTCTAATGATGAAGATGAAGATGATCGAGGGACACATGGAAGTGTTTCTTT 1901
Query 1322 GGGTTATGATGGAGGAGG-GG-G-TGGGGGAGGAGAAGGAGATGAATCCGAGTCAAAAAG 1378
|||||| ||||||||||| || | |||||||||||||||||||||||| ||||| |||||
Sbjct 1902 GGGTTACGATGGAGGAGGAGGAGGTGGGGGAGGAGAAGGAGATGAATCAGAGTCGAAAAG 1961
Query 1379 AAGGAAACTAGAAGCTTATGCAGCAGAGATGAGTGGAGCAACAAGAGCCGTACGTGAACC 1438
||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 1962 AAGGAAACTAGAAGCTTTTGCAGCAGAGATGAGTGGATCAACAAGAGCCATACGTGAGCC 2021
Query 1439 AAGAGTTGTTGTGCAAACAACGAGTGATGTTGACATTCTTGATGATGGCTATCGCTGGCG 1498
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2022 AAGAGTTGTTGTGCAGACAACGAGTGATGTTGACATTCTTGATGATGGTTATCGCTGGCG 2081
Query 1499 GAAATATGGTCAGAAAGTTGTCAAAGGAAATCCAAATCCCAGGAGTTATTACAAATGCAC 1558
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2082 AAAATATGGTCAGAAAGTTGTCAAAGGCAATCCAAATCCAAGGAGTTATTACAAATGCAC 2141
Query 1559 AGCTCCTG-ACTGTACAGTGAGAAAACATGTTGAAAGAGCTTCTCATGATCTCAAATCCG 1617
|||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2142 AGCTCCAGGA-TGTACAGTGAGGAAACATGTTGAAAGAGCTTCTCATGATCTCAAATCCG 2200
Query 1618 TTATAACAACTTACGAAGGCAAACATATCCATGATGTCCCCGCTGCACGCAACAGCAGCC 1677
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2201 TTATAACAACTTACGAAGGCAAACATAACCATGACGTCCCCGCTGCACGCAACAGCAGCC 2260
Query 1678 ACGGAGGCGGTGGC-A--GCGGTAACAGTAACAGTGGCGGTTCAGCTGCTGTTTCTCACC 1734
||||||||||||| | | |||||| ||||||| ||||||||||| || ||||||||||
Sbjct 2261 ACGGAGGCGGTGGTGATAGTGGTAACGGTAACAGCGGCGGTTCAGCCGCAGTTTCTCACC 2320
Query 1735 ATTACCACAACGGTCATCACACAGAGCCGCCGCGTGGGAGATTCGACAGACAAGTCACAA 1794
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 2321 ATTACCACAACGGTCATCACTCAGAGCCGCCACGTGGGAGATTCGACAGACAAGTCACAA 2380
Query 1795 CGA-CTAATCAGTCTCCTTTTGGACGTCCGTTTAGCTTTCAGCCACATTTGGGTCCTCCT 1853
| | | ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 2381 CTAAC-AATCAGTCTCCTTTTAGCCGTCCCTTTAGCTTTCAGCCACATTTGGGTCCTCCT 2439
Query 1854 TCGGGTTTCTCGTTCGGTTTAGGACAAGCCGGTTTGGCTAATCTTTCAATGCCTGGTTTA 1913
|| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2440 TCTGGTTTCTCCTTCGGTTTAGGACAAACCGGTTTGGTTAATCTTTCAATGCCTGGTTTA 2499
Query 1914 GCGTATGGTCAAGGGAAAATGCCGGGTTTGCCTCACCCGTATTTGACACAACCGGTTGGG 1973
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2500 GCGTATGGTCAAGGGAAAATGCCGGGTTTGCCTCACCCGTATATGACACAACCGGTTGGG 2559
Query 1974 ATGAGTGAAGCAATGATGCAGAGAGGGATGGAACCAAAGGTCGAACCGGTTTCGGATTCA 2033
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2560 ATGAGTGAAGCAATGATGCAGAGAGGGATGGAACCAAAGGTTGAACCGGTTTCAGATTCA 2619
Query 2034 GGACAATCGGTATATAACCAGATCATGAGTAGATTACCTCAGATTTGAATTTTACTATTC 2093
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 2620 GGACAATCGGTATATAACCAGATCATGAGTAGATTACCTCAGATTTGAAATTTACTCTTC 2679
Query 2094 T 2094
|
Sbjct 2680 T 2680
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104166130875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5