BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950287
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56300.1 | Symbols: GAMT2 | gibberellic acid methyltransfera... 1897 0.0
> AT5G56300.1 | Symbols: GAMT2 | gibberellic acid methyltransferase
2 | chr5:22799507-22801692 FORWARD LENGTH=1436
Length=1436
Score = 1897 bits (1027), Expect = 0.0
Identities = 1152/1212 (95%), Gaps = 10/1212 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAAGAGATAGAACACTAATGGAGTCCCCAAGCCTACCAATGACGGCAAAAGACTG 60
|||||||||||| ||| || |||||||||| |||||||| || |||||||| ||||||||
Sbjct 43 AGAGAGAAGAGACAGAGCATTAATGGAGTCACCAAGCCTTCCGATGACGGCCAAAGACTG 102
Query 61 GACCACCACCAGTCTCCACCGTGTATTCGCTATGCAAGGCGGCGAAGATGACCTCAGCTA 120
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 103 GACCACCACCAGTCTCCACCGTGTCTTCGCCATGCAAGGCGGCGAAGATGACCTCAGCTA 162
Query 121 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 CGTCAACAATTCCGATAGCCAAGCTTTGGCTATAACCTTAAGCAAACCAATCCTTATCTC 222
Query 181 AACTCTCGAATCCATCAAACTCTTCTCCGACCAAACTTCTCCCATCAGAATCACCGACCT 240
| ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||
Sbjct 223 ATCTCTCCAATCCATCAAACTCTTCTCCGACCAAA---CTCCCATCAAAATCACCGATCT 279
Query 241 CGGCTGCGCCACCGGCGCCAACACGTTTACAACAGTTGATACGGTGGTTGAGACGTTACA 300
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct 280 CGGCTGCGCCACCGGCTCCAACACGTTTACTACCGTTGATACGGTGGTTGAGACGTTACA 339
Query 301 ACGGCGATACAC-GGC-GGTGTACGGTGGTGGTGGCTCGCCGGAGTTTGAGGCTTTCTTT 358
|||||||||||| | | |||| |||||||||||| |||||||||||||||||||||||
Sbjct 340 ACGGCGATACACTGCCAGGTG--CGGTGGTGGTGGGTCGCCGGAGTTTGAGGCTTTCTTC 397
Query 359 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTCAAAAACAGAAA 418
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 398 TGTGATTTGCCTTCTAATGACTTCAACATGTTGTTCAAGTTGTTGGCTGAGAAACAGAAA 457
Query 419 GTTGATTCGCCCGCGAAATACTTCGCTGGGGGCGTTGCTGGTTCGTTCTATGACAGGC-T 477
||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| ||| |
Sbjct 458 GTTGACTCGCCGGCGAAATACTTCGCTGGCGGCGTTGCTGGTTCGTTCTATGACCGGCTT 517
Query 478 TTTCCCGAGAGGAACGATTCATGTCGCTGTTAGCTTAAGTGCCTTGCACTGGCTCTCTCA 537
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 518 TTTCCC-AGAGGAACGATTCATGTCGCTGTGAGCTTAAGTGCCTTGCACTGGCTCTCTCA 576
Query 538 GATACCGGAGAAAGTATTGGAGAAAGGATCGAGAACGTGGAACAAAGGGAAAACGTGGAT 597
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 577 GATACCGGAGAAAGTATTGGAGAAAGAATCAAGAACGTGGAACAAAGGGAAAACGTGGAT 636
Query 598 AGAAGGAGCAAAGAAAGAAGTAGTGGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 657
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 637 AGAAGGAGCAAAGAAAGAAGTAGTAGAAGCATACGCAGAGCAATCAGACAAAGATTTGGA 696
Query 658 TGATTTCATGAGCTGTCGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TGATTTCATGAGCTGTAGGAAAGAAGAAATGGTGAAAGGAGGAGTGTTGTTTGTGTTGAT 756
Query 718 GGCTGGTCGTCCTTCTGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 777
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GGCTGGGCGTCCTTCAGGCTCAAGTAGTCAATTTGGGGACCAAGATACTCGAGCCAAACA 816
Query 778 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGATGAGGGTTTGATAGA 837
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 817 TCCTTTCACAACTACCATGGAACAAGCTTGGCAAGATTTAATAGAAGAGGGTTTGATAGA 876
Query 838 TGAAGAGACAAGAGACGGTTTCAACATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGGC 897
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 877 TGAAGAAACAAGAGACGGTTTCAATATTCCGGCGTACATGAGAAGTCCGGAGGAAGTGAC 936
Query 898 GGCCGGAATTGACCGTTGCGGTGGTTTCAAGATAGAGAAAATGGAATTTATGAAAATAGT 957
|||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||
Sbjct 937 GGCCGGAATTGACCGTTGTGGTGGTTTCAAGATAGGGAAAATGGACTTCCTGAAAATAGT 996
Query 958 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCTTACGGACGAGC 1017
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 997 TGAATATTCAGATGAGAAACAAGAAGAGTGGAAGAAAGATCCGGTTTCATATGGACGAGC 1056
Query 1018 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 CAGGACCAATTTGGTTCAAGCTGCTATTCGTCCTATGGTTGATGCTTATCTTGGACCAGA 1116
Query 1078 ACTATCCCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1137
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CCTATCTCATGAGCTCTTCAAAAGATATGAAAATCGTGTTTCTACAAACCAAGAATTTCT 1176
Query 1138 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAATTTGATGATGATA 1197
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 1177 CCATATAACTTGTTTTTATGGAGTCGTCGTGTTTTCCGCCATCCGAGTTTAATGTTGATA 1236
Query 1198 TAGTTATATCTA 1209
|| || || |||
Sbjct 1237 TAATT-TAGCTA 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59387244735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5