BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950288
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56310.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2396 0.0
AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 52.8 1e-05
> AT5G56310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:22802316-22804377 FORWARD LENGTH=2062
Length=2062
Score = 2396 bits (1297), Expect = 0.0
Identities = 1514/1618 (94%), Gaps = 17/1618 (1%)
Strand=Plus/Plus
Query 15 AAGAGAATGATACAGAGAATCAATGCCTTGAGCTTAAGTTCTGGTCTAAATTGGTTCGTT 74
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AAGAGAATGATTCAGAGAATCAATGCCTTGAGCTTAAGCTCTGGTCTAAATTGGTTCGTT 60
Query 75 ACCTC-TCTGAAAATCCATGGAACA-AACCTCAAAACATTAAAGCAATCTCATTGTTTCA 132
||||| | ||||||||||||||| | ||||||||||||||||||||||||||||||| ||
Sbjct 61 ACCTCAT-TGAAAATCCATGGAA-ATAACCTCAAAACATTAAAGCAATCTCATTGTTACA 118
Query 133 TGATCATAACCGGTTTAAACCGAGACAATCTCAACGTTGCCAAATTCATAGAAGCATGTT 192
|||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 119 TGATCATAACCGGTTTAAACAGAGACAACCTCAACGTTGCCAAATTCATCGAAGCATGTT 178
Query 193 CCAATGCAGGACATCTCCGATATGCTTACTCTGTATTTACCCATCAGCCATTTCCCAATA 252
| ||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||
Sbjct 179 CAAATGCAGGACATCTCCGATATGCTTACTCTGTATTCACCCACCAGCCATGTCCCAATA 238
Query 253 CTTATCTGCACAACACCATGATTAGAGCTTTGTCTCTCGTCGACGAACGGAATGCGCACT 312
||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |
Sbjct 239 CTTATCTCCACAACACCATGATTAGAGCTTTGTCTCTCCTCGACGAACCCAATGCGCATT 298
Query 313 CGATTGCGATCACGGTTTATAGAAAGTTCTGGGCTTTTTGCGCTAAGCCTGACACGTTTA 372
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 299 CGATTGCGATCACGGTTTATAGAAAGTTATGGGCTTTGTGTGCTAAGCCTGACACGTTTA 358
Query 373 CTTTCCCGTTTGTGTTGAAGATTGTTGTTCGGGTTTCTGATGTTTGGTTTGGGAGACAGG 432
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 359 CTTTCCCGTTTGTGTTGAAGATTGCTGTTAGGGTTTCTGATGTTTGGTTTGGGAGACAGA 418
Query 433 TTCATGGGCAAACAGTGGTTTTTGGGTTTGATTCGAGTTTTCATGTTGTGACAGGTTTGA 492
||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 419 TTCATGGACAAGTTGTGGTTTTTGGGTTTGATTCGAGCGTTCATGTTGTAACAGGTTTGA 478
Query 493 TTCAGATGTATTCGTCGTGTGGTGGTTTGAGAGATGCACGTAAGGTGTTCGATGAAATGC 552
|||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 479 TTCAGATGTATTTTTCGTGTGGTGGTTTGGGAGATGCACGTAAGATGTTCGATGAAATGC 538
Query 553 GTGTCAGGGATGTGAATGTTTGGAATGCGTTATTAGCAGGGTATGGGAAAGTGGGTGAGA 612
||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 539 TTGTCAAGGATGTGAATGTTTGGAATGCGTTGTTAGCAGGGTATGGGAAAGTTGGTGAGA 598
Query 613 TGGATGAAGCTAGGGGTTTGCTGGAGATGATGCCTTGTTGGGTAAGAAATGCA-GTTTCT 671
|||||||||||||| ||||||| ||||||||||||||||||||||| |||| | ||||||
Sbjct 599 TGGATGAAGCTAGGAGTTTGCTTGAGATGATGCCTTGTTGGGTAAGGAATG-AGGTTTCT 657
Query 672 TGGACTTGTGTGATCTCTGGATATGCGAGGAGTGGACGAGCTAGCGAAGCTATTGAAGTG 731
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 TGGACTTGTGTGATCTCTGGATATGCGAAAAGTGGACGAGCTAGCGAAGCTATTGAAGTG 717
Query 732 TTTCAGAGAATGCTGATGGAAAATGTTGACCCTGATGAAGTTACGCTTTTGGCTGTTCTC 791
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 718 TTTCAGAGAATGCTGATGGAGAATGTTGAGCCTGATGAAGTTACGCTTTTGGCTGTGCTC 777
Query 792 TCCGCTTGTGCTGATCTTGGTTCACTTGAATTGGGTGAAAGAATATGTAGCTACGTTGAT 851
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 778 TCAGCTTGTGCTGATCTTGGTTCACTTGAATTGGGTGAAAGAATATGTAGCTATGTTGAT 837
Query 852 CACCGAGGGATGAACAGAGCGGTTTCGTTGAACAATGCAGTCATTGATATGTATGCGAAA 911
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 838 CACCGAGGGATGAACAGAGCGGTTTCATTGAACAATGCGGTCATTGATATGTATGCGAAA 897
Query 912 TCAGGGAATATAACAAAGGCGTTGGAGGTGTTTGAGAGTGTTAATGAGAGAAATGTGGTT 971
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 898 TCAGGGAATATAACAAAGGCGTTGGATGTGTTTGAGTGTGTTAATGAGAGAAATGTTGTT 957
Query 972 ACTTGGACTACTATAATAACTGGGCTAGCTACGCACGGGCACGGAGCTGAAGCCTTGGTG 1031
|||||||| |||||||| | ||||||||||||||||||||||||||||||||||| | |
Sbjct 958 ACTTGGACGACTATAATCGCAGGGCTAGCTACGCACGGGCACGGAGCTGAAGCCTTAGCG 1017
Query 1032 ATGTTTGACCGTATGGTTAAAGCTGGTGTGAAACCTAACGATGTTACTTTCATTGCAATC 1091
|||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 1018 ATGTTTAACCGTATGGTTAAAGCTGGCGTGAGACCGAACGATGTTACTTTCATTGCAATC 1077
Query 1092 CTTTCAGCTTGCAGTCATGTCGGTTGGGTCGATCTTGGAAAACGGTTT-TTTAACTCAAT 1150
||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||
Sbjct 1078 CTTTCAGCTTGCAGTCATGTCGGTTGGGTTGATCTTGGAAAAC-GTTTGTTTAACTCAAT 1136
Query 1151 GAGATCGAAGTACGGGATTAATCCGAACATTGAGCATTACGGATGCATGATTGATTTGCT 1210
||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1137 GAGATCGAAATACGGGATTCATCCAAACATTGAGCATTACGGATGCATGATTGATTTGCT 1196
Query 1211 AGGACGAGCAGGTAAACTTCGAGAAGCGGAAGAAGTTATTAAAAGCATGCCCTTTGAGTC 1270
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||| || |
Sbjct 1197 AGGACGAGCAGGTAAACTCCGAGAGGCGGATGAAGTTATTAAAAGCATGCCCTTTAAGGC 1256
Query 1271 TAATGCTGCAATATGGGGATCTCTTCTTGCTGCTTCAAATGTTCATCATGATATTGATG- 1329
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1257 CAATGCTGCAATATGGGGATCTCTTCTTGCTGCTTCAAATGTTCATCATGATCTTGA-GC 1315
Query 1330 TTGGAGAAAGAGCTTTATA-TCAGCTGATTAAGCTAGAACCGAATAACAGCGGTAACTAT 1388
|||||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||
Sbjct 1316 TTGGAGAAAGAGCTTT-GAGTGAGCTGATTAAGTTAGAACCGAATAACAGCGGTAACTAT 1374
Query 1389 ATGCTTTTAGCTAATTTATACTCGAATTTAGGGAGGTGGGATGAGTCGAGGATGATGAGG 1448
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1375 ATGCTTTTAGCTAATTTATACTCGAATTTAGGAAGGTGGGATGAGTCGAGGATGATGAGG 1434
Query 1449 AAGATGATTAAAGGGATTGGTGTGAAGAA-ACTGGCTGGTGAAAGCTCCATAGAAGTTGA 1507
|| ||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1435 AACATGATGAAAGGGATTGGTGTGAAGAAGA-TGGCTGGTGAAAGCTCCATAGAAGTTGA 1493
Query 1508 AAACAGAGTATATAAATTCATCTCAGGGGATCTTTCGCATCCTCAAGTCGAAAAGATTCA 1567
|||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||
Sbjct 1494 AAACAGAGTATACAAATTCATTTCAGGGGATCTTACGCATCCTCAAGTCGAAAGGATTCA 1553
Query 1568 TGAACTTCTACAAGAGATGGATTTGCAGATACAAAGCAATGAAGTTTGAGATATAAAA 1625
|||| |||||||||||||||||||||| ||||| ||||| | |||||||| | ||||
Sbjct 1554 TGAAATTCTACAAGAGATGGATTTGCAAATACAGAGCAA--A-GTTTGAGAAAAAAAA 1608
> AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:9158380-9159897 FORWARD LENGTH=1518
Length=1518
Score = 52.8 bits (28), Expect = 1e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 528 GCACGTAAGGTGTTCGATGAAATGCGTG 555
||||||||||||||||||||||||||||
Sbjct 913 GCACGTAAGGTGTTCGATGAAATGCGTG 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5