BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950295
Length=2005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein | chr5... 3083 0.0
> AT5G56360.1 | Symbols: PSL4 | calmodulin-binding protein | chr5:22823302-22828025
REVERSE LENGTH=2303
Length=2303
Score = 3083 bits (1669), Expect = 0.0
Identities = 1905/2014 (95%), Gaps = 36/2014 (2%)
Strand=Plus/Plus
Query 1 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTGGTAATATCATT-CTTGGTCTCCGTCTCT 59
||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||
Sbjct 56 CGGTTCCGATCTCGAAGAAGATGAGAGTAGTAGTAATATC-TTCCTTTGTCTCCGTCTCT 114
Query 60 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTTCTATTAGATCAACCTCGTCTCCACCT 119
||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 115 TTGCAACTATCCTTTCTTCTTCTCCTTGCTTCTGCCATTAGATCAAGCTCGTCTCCACCG 174
Query 120 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCTGAG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 175 AACGATCCGTTTCTCGGCATTTCTCCTCAAGATGAGAAGTATTACAAGTCATCTTCAGAG 234
Query 180 ATAAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAACTTAATGATGATTTCTGT 239
|| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 235 ATTAAGTGTAAGGATGGATCAAAGAAATTCACGAAAGCTCAGCTTAATGACGATTTCTGT 294
Query 240 GATTGTCCTGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAAATGGAAAATTCTAT 299
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 295 GATTGTTCAGATGGAACTGACGAGCCAGGTACCTCAGCTTGTCCAACTGGAAAATTCTAT 354
Query 300 TGTCGGAATGCCGGCCACTCTCCGTTGGTTTTGTTTTCTTCCAGAGTCAATGATGGTATT 359
|| ||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||||
Sbjct 355 TGCCGGAACGCCGGCCACTCTCCGGTGATTTTGTTTTCTTCCAGAGTTAATGATGGTATT 414
Query 360 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCAAGTGTCATGCCAAAATACATGT 419
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 415 TGTGATTGTTGTGATGGAAGTGATGAGTATGATGGTCACGTATCATGCCAAAATACATGC 474
Query 420 TGGGAAGCTGGGAAAGCTGCTCGAGAAAATCTGAAGaaaaaaaTTGAAACATATAATCAA 479
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 475 TGGGAAGCTGGAAAAGCTGCTCGAGAAAATCTGAAGAAGAAAATTGAAACATATAATCAA 534
Query 480 GGGCTTGTAGTAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTAGAGAAAGATGCA 539
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 GGGCTTGTAATAAGGAGACAGGAAATCGAACAGGCGAAAGTGGGTCTGGAGAAAGATGCA 594
Query 540 GCAGAATTGAAGAAGCTGAAAAGTGAAG-AGAAGATTCTGAAAGGCCTTGTTGATCAGCT 598
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 595 GCAGAATTGAAGAAGCTGAAAAGTG-AGCAGAAGATTCTGAAAGGCCTTGTTGATCAGCT 653
Query 599 TAAAGATCGTAAAGAACAAATTgagaaggtagaggagaaggagcgtctacagaaagaaaa 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAAAGATCGTAAAGAACAAATTGAGAAGGTAGAGGAGAAGGAGCGTCTACAGAAAGAAAA 713
Query 659 ggaggagaaggaaaagaaagaggCCGAATTAGCAGCCCAGCAAGGAAAGGGGGATGCTGA 718
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 714 GGAGGAAAAGGAAAAGAAAGAGGCCGAATTAGCAGCCCAGCAAGGAAAAGGGGATGCTGA 773
Query 719 GGAGAAGACAGATGACAATGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGGCGCCTGA 778
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 774 GGAGAAGACAGATGACAGTGAAAAAGTTGAAGAAAGCTCACATGATGAAGGGACGCCTGC 833
Query 779 AGTTTCACAGCACGATGAAAATCCCGATGAAACCACACATCATGATGAGATTGGTAATTA 838
||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 834 AGTTTCACA--AC-------A---CGATGAAACCACACATCATGATGAGATTGGTAATTA 881
Query 839 CAAAGATTATCCTTCAGAAGAGGAGCCAGCTGCTGAAGCTGAAGCTAACCCAACAGCAAC 898
||| |||||||||||||| ||||||||| || |||||||| | ||| ||||
Sbjct 882 CAAGGATTATCCTTCAGATGAGGAGCCA---GC---AGCTGAAGGT----GAAC--CAAC 929
Query 899 AAGTATATTGGAAGAGGCTACTCACACTCATCCAGCAGACGAGCATGTTGTGGAGACG-A 957
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 930 AAGTATATTGGATGAGGCTACTCACACTAATCCAGCAGACGAGCATGTTGTGGAGA-GAA 988
Query 958 AGGAGGAATCTCCCTCATCTGAGGATT-C-CGT----CACAGAAGGGTCTCAAAATGATG 1011
| ||||||||| ||||||||||||||| | | | |||||| | |||||||||||||
Sbjct 989 AAGAGGAATCTACCTCATCTGAGGATTCCTCTTCCCCCACAGATGAATCTCAAAATGATG 1048
Query 1012 GTAGTACCAAAAAAGAGGAATCAAACGAGGTTAAGAAAGTGGAGGATCTTGTAACCGAAA 1071
||||| | |||| ||||||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 1049 GTAGTGCTGAAAAGGAGGAATCAGACGAGGTTAAGAAAGTGGAGGATTTTGTAACCGAGA 1108
Query 1072 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 AGAAGGAAGAGTTGTCAAAGGAAGAGTTGGGGCGTCTTGTTGCCTCTCGTTGGACAGGAG 1168
Query 1132 AGAAATCTGATAAGCCAACTGAGGCAGACGATAGCCCCAAAGCTGATGATCAGGAAAACC 1191
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1169 AGAAATCTGATAAGCCAACTGAGGCAGACGATATCCCCAAAGCTGATGATCAGGAAAACC 1228
Query 1192 ATGAGCACACGCCCACCACTCCACATGAAGTAGATGAAGATGATGGATTTGTTTCAGATG 1251
||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1229 ATGAGCACACGCCCATCACTGCACATGAAGCAGATGAAGATGATGGATTTGTTTCAGATG 1288
Query 1252 GTGACGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCCGAAGATGATTCCT 1311
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1289 GTGATGAGGATACCAGCGATGATGGGAAATACAGCGACCATGAACCTGAAGATGATTCCT 1348
Query 1312 ATGAAGAGGAGTATCGCCATGATTCTACTTCTTCATACAAATCTGATGCCGATGATGATG 1371
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1349 ATGAAGAGGAGTATCGCCATGATTCTAGTTCTTCATACAAATCTGATGCAGATGATGATG 1408
Query 1372 TCGATTTTTCAGAGTCAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1431
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1409 TCGATTTTTCAGAGACAACCTCAAATCCTACTTGGTTGGAGAAGATACAAAAGACTGTCA 1468
Query 1432 AGAACATTTTGCAGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCGGAGGCTG 1491
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1469 AGAACATTTTGCTGGCTGTGAATTTATTCCAAACCACCCCAGTGGACAAATCAGAGGCTG 1528
Query 1492 ATCGGGTACGCAAAGAATACGACGAGTCGAGCTCCAAACTGCACAAAATACAGTCAAGGA 1551
|||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||
Sbjct 1529 ATCGGGTACGCAAAGAATACGACGAGTCAAGCTCCAAACTGAATAAAATACAGTCAAGGA 1588
Query 1552 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCGGAGAAAGAGTTCTATTCAT 1611
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1589 TATCGAGCTTAGAAAAGAAGCTAAAACAAGACTTTGGACCAGAGAAAGAGTTCTATTCAT 1648
Query 1612 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 TCCATGGTCGTTGTTTTGAGAGCAAACAGGGCAAGTATACTTACAAAGTCTGCGCATATA 1708
Query 1672 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAATGGGACAAATTTG 1731
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1709 AAGAAGCAACACAAGAGGAGGGCTATTCGAAAACTCGGTTAGGGGAGTGGGACAAATTTG 1768
Query 1732 AGAACTCTTACCAATTCATGTCATATACCAACGGAGATAAATGCTGGAACGGTCCCGATA 1791
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1769 AGAACTCTTACCAATTCATGTCATATACCAACGGAGAAAAATGCTGGAATGGTCCCGATA 1828
Query 1792 GAAGCCTTAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1851
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 GAAGCCTGAAGGTGAAACTAAGATGTGGGTTGAAAAATGAGCTTATGGATGTCGATGAAC 1888
Query 1852 CAAGCCGTTGCGAATATGCGGCGATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1911
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1889 CAAGCCGTTGCGAATATGCGGCCATCTTATCTACTCCAGCTCGGTGTTTGGAAGACAAAC 1948
Query 1912 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCCCAGAATCACG 1971
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1949 TTAAAGAACTACAACAGAAGCTCGAGAAGTTGATGAACCAAGACAAACCTCAGAATCACG 2008
Query 1972 ACGAACTCTGATCATTTCCATCTGAAATAATTCT 2005
||||||||||||||||| || |||||||||||||
Sbjct 2009 ACGAACTCTGATCATTTTCACCTGAAATAATTCT 2042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99346878555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5