BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950298

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56370.1 | Symbols:  | F-box/RNI-like/FBD-like domains-conta...   379    1e-104


> AT5G56370.1 | Symbols:  | F-box/RNI-like/FBD-like domains-containing 
protein | chr5:22835982-22837941 REVERSE LENGTH=1601
Length=1601

 Score =  379 bits (205),  Expect = 1e-104
 Identities = 340/403 (84%), Gaps = 17/403 (4%)
 Strand=Plus/Plus

Query  9     TGGGAGT-TACTTATGTCTATGCTCCAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA  67
             ||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1006  TGGGA-TATACTTATGTTTATGCTCAAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA  1064

Query  68    CGATATCCATCATGATTG-CT-TTGTTTCTCGA-G--ATCCTATGGTTCACTGGGAGGAA  122
             ||| | ||| |  | |   || ||||||||| | |  |||||||| |||| |||||||||
Sbjct  1065  CGAGACCCA-CG-GCTACACTATTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAA  1122

Query  123   CCAAGCTC--T-CCTAAAACGTTGATCTTCGTTCTTGAGACTTTTGAGTGGAGAAACTAC  179
             ||||||||  | ||| |||| ||||| || |||||||||||||| |||||||||||||||
Sbjct  1123  CCAAGCTCGGTTCCTGAAACTTTGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTAC  1182

Query  180   AGAGGATGGAAGAAAGAAAGA-GATCTTGCAAGGTTTATCTTGAAACATTCAAGGCGTCT  238
             ||||| | |||||  |||| | || || ||||| ||| |||||||||||||||| |||||
Sbjct  1183  AGAGGGTTGAAGATGGAAA-ACGAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCT  1241

Query  239   AAAGATTGCGACTTTTTCGCCACCAGACACCACACAACTGAGGA-CAGAATTTCGTACCA  297
              |||||||| || ||||||||| |||||  || |||| |||| | | ||||| ||||| |
Sbjct  1242  GAAGATTGCAACCTTTTCGCCAGCAGACTGCAAACAAGTGAGAATC-GAATTACGTACGA  1300

Query  298   CATTTGGAATGAAATATCGTATTCTCACGGAATTGGCGCGTTTGCCGAGGGGTTCAACAG  357
             || ||||||||||||||||||| |||| |||||||||||||||||| ||||||||| |||
Sbjct  1301  CAGTTGGAATGAAATATCGTATACTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAG  1360

Query  358   AATGTGAGCTTGTCTTTGGTTAAGTTATGCCTTTCTATAAAGA  400
             | ||||||||||| ||||||||||| | || ||| ||||||||
Sbjct  1361  AGTGTGAGCTTGTGTTTGGTTAAGTAA-GCTTTTGTATAAAGA  1402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5