BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950298 Length=400 Score E Sequences producing significant alignments: (Bits) Value AT5G56370.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 379 1e-104 > AT5G56370.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr5:22835982-22837941 REVERSE LENGTH=1601 Length=1601 Score = 379 bits (205), Expect = 1e-104 Identities = 340/403 (84%), Gaps = 17/403 (4%) Strand=Plus/Plus Query 9 TGGGAGT-TACTTATGTCTATGCTCCAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA 67 ||||| | ||||||||| ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1006 TGGGA-TATACTTATGTTTATGCTCAAACATTCCCCGAAACTTCGATCTCTCAAGCTTAA 1064 Query 68 CGATATCCATCATGATTG-CT-TTGTTTCTCGA-G--ATCCTATGGTTCACTGGGAGGAA 122 ||| | ||| | | | || ||||||||| | | |||||||| |||| ||||||||| Sbjct 1065 CGAGACCCA-CG-GCTACACTATTGTTTCTCAAAGTGATCCTATGTTTCATTGGGAGGAA 1122 Query 123 CCAAGCTC--T-CCTAAAACGTTGATCTTCGTTCTTGAGACTTTTGAGTGGAGAAACTAC 179 |||||||| | ||| |||| ||||| || |||||||||||||| ||||||||||||||| Sbjct 1123 CCAAGCTCGGTTCCTGAAACTTTGATGTTTGTTCTTGAGACTTTGGAGTGGAGAAACTAC 1182 Query 180 AGAGGATGGAAGAAAGAAAGA-GATCTTGCAAGGTTTATCTTGAAACATTCAAGGCGTCT 238 ||||| | ||||| |||| | || || ||||| ||| |||||||||||||||| ||||| Sbjct 1183 AGAGGGTTGAAGATGGAAA-ACGAACTCGCAAGTTTTCTCTTGAAACATTCAAGACGTCT 1241 Query 239 AAAGATTGCGACTTTTTCGCCACCAGACACCACACAACTGAGGA-CAGAATTTCGTACCA 297 |||||||| || ||||||||| ||||| || |||| |||| | | ||||| ||||| | Sbjct 1242 GAAGATTGCAACCTTTTCGCCAGCAGACTGCAAACAAGTGAGAATC-GAATTACGTACGA 1300 Query 298 CATTTGGAATGAAATATCGTATTCTCACGGAATTGGCGCGTTTGCCGAGGGGTTCAACAG 357 || ||||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||| Sbjct 1301 CAGTTGGAATGAAATATCGTATACTCATGGAATTGGCGCGTTTGCCAAGGGGTTCAGCAG 1360 Query 358 AATGTGAGCTTGTCTTTGGTTAAGTTATGCCTTTCTATAAAGA 400 | ||||||||||| ||||||||||| | || ||| |||||||| Sbjct 1361 AGTGTGAGCTTGTGTTTGGTTAAGTAA-GCTTTTGTATAAAGA 1402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18900673624 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5