BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950301
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56380.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 852 0.0
AT3G49030.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 65.8 6e-10
AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 56.5 3e-07
> AT5G56380.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22838672-22841015 REVERSE LENGTH=2014
Length=2014
Score = 852 bits (461), Expect = 0.0
Identities = 631/711 (89%), Gaps = 19/711 (3%)
Strand=Plus/Plus
Query 1 GGTTTGTCGACAGATTGTTGATGTCACGTGAAGGTCTTGTTCTACAAAGTCTCTATCTCA 60
||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||| | |||||
Sbjct 733 GGTTTGTGGACAGATCGTTGCTGTCACGTGAAGGTCGTGTTCTACAAACTCTGTTTCTCA 792
Query 61 AGTTAGGTCGACGATGCTCATATGATGATATTGCAATCTGGTTTGGAATCGCGGTGAAAC 120
|||||||||||| ||| ||||||||||||||||| || ||| |||||||||| |||||||
Sbjct 793 AGTTAGGTCGACAATGTTCATATGATGATATTGCGATTTGGGTTGGAATCGCAGTGAAAC 852
Query 121 GTGGTCTAATGGAGCTCAAACTCGAATACGA-TGGCTGCTTA-GATCC-GCGGGATAGTT 177
|||||||||||||||| |||||| ||||| | || | || || |||| | | |||||
Sbjct 853 GTGGTCTAATGGAGCTGAAACTCAAATAC-ACTGACAGC-TATTATCCAAAGCG-TAGTT 909
Query 178 TTCTTCCAAAAAATCTTTACACTTGTGAAACACTTGTGGTCTTGAAATTGAAGAAAGGTT 237
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 CTCTTCCAAGAAGTCTTTACACTTGTGAAACACTTGTGGTCTTGAAATTGAAGAAAGGTT 969
Query 238 ATTTGGATGTTCCTGATCTCGTTTGTCTAAGGTCTCTGAAAACTTTGTCCCTCAAATCTA 297
|||||||||||||||||||||||||||| ||||||||||||||||| || |||| | ||
Sbjct 970 ATTTGGATGTTCCTGATCTCGTTTGTCTTAGGTCTCTGAAAACTTTATCGCTCAGAGATA 1029
Query 298 TG-ATATACTCCAACGCCAGTTCTCTCCTTAGACTTTTACCCAATTGTCCTGTTCTTGAA 356
|| || |||||||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct 1030 TGAAT-TACTCCAACGCCAGTTGTCTCCTTAGACTTTTAGCCAGTTGTCCTGTTCTTGAA 1088
Query 357 GACTTGTTCATACAACAATGTTA-TATACATTCCTGCGCGCTGAGTTTCAAGATTATACT 415
|| ||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||
Sbjct 1089 GAGTTGTTCATACAACAAGGTTACTAT-GATTCCTGCGCGTTGAGTTTCAAGATTATACT 1147
Query 416 GCCTTCCTTGAAGAAGTTATCTTTTGTCCCAAAAAGAAAGAAAAGGTGGTATTCTATGAT 475
||||| ||||||||||||||||| | ||||||||||||| |||| ||||||| |||
Sbjct 1148 GCCTTGCTTGAAGAAGTTATCTTATCTCCCAAAAAGAAA-AAAA--AAGTATTCTGGGAT 1204
Query 476 TGACCCG-TC-GAAAACTTCTAGTGGAATCACAGGACTTGTGTTAGATGCTCCTTCTTTG 533
||| ||| || | || |||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1205 TGA-CCGATCTG-AAGTTTCTGGTGGAATTTCAGGACTTGTGTTAGATGCTCCTTCTTTG 1262
Query 534 AAATACTTGAACATTGTAGATCGTTCGGGTGGTTTTTCGGTTAGCGAGATTATTAACATC 593
||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 1263 AAATACTTGCACATTGTAGATCGCTCGGGTCTTTTTTCGGTTAGCGAGATTATCAACATC 1322
Query 594 AATGCTGTGGTGAAGGCCACAATTGAGGTT-ATTCTCAGCCAACCCGAGAAGCTTCTGCA 652
|||||||| ||||| ||||| |||||||| || | ||||| |||||||||||||||| |
Sbjct 1323 AATGCTGTAGTGAAAGCCACTCTTGAGGTTAATGC-CAGCCGACCCGAGAAGCTTCTGTA 1381
Query 653 TTCTCTTGTTTCCGTTGAGCATATTCGTTTATGTTTATCTGCTACAGAGGT 703
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TTCTCTTGTTTCCGTTGAGCATATTCGTTTATGTTTATCTGCTACAGAGGT 1432
> AT3G49030.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18173138-18174769 FORWARD
LENGTH=1332
Length=1332
Score = 65.8 bits (35), Expect = 6e-10
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 512 TGTGTTAGATGCTCCTTCTTTGAAATACTTGAACATTGTAG 552
|||| || |||||||||||||||||||||||||||||||||
Sbjct 714 TGTGATAAATGCTCCTTCTTTGAAATACTTGAACATTGTAG 754
> AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18169079-18170660 FORWARD
LENGTH=1344
Length=1344
Score = 56.5 bits (30), Expect = 3e-07
Identities = 34/36 (94%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 512 TGTGTTAGATGCTCCTTCTTTGAAATACTTGAACAT 547
|||| || ||||||||||||||||||||||||||||
Sbjct 708 TGTGATAAATGCTCCTTCTTTGAAATACTTGAACAT 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5