BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950303

Length=419
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56390.1 | Symbols:  | F-box/RNI-like/FBD-like domains-conta...   296    1e-79


> AT5G56390.1 | Symbols:  | F-box/RNI-like/FBD-like domains-containing 
protein | chr5:22842790-22844273 REVERSE LENGTH=1287
Length=1287

 Score =  296 bits (160),  Expect = 1e-79
 Identities = 205/227 (90%), Gaps = 2/227 (1%)
 Strand=Plus/Plus

Query  35   CACCGCAAGTGTCGACATTTATTCTCCCCAAACTACGGAGCTTTTGGGCTCTCTAACTTC  94
            |||||||||| | ||| ||| |||||||||||||| |||| |||||||||||||||||||
Sbjct  765  CACCGCAAGTATGGACGTTTTTTCTCCCCAAACTAAGGAGATTTTGGGCTCTCTAACTTC  824

Query  95   AGTCAAGCGTCTTTTTCTCTGCTTACCAACCTCAGAGGATGCGTATCCTGTTGGTAATAT  154
            |  ||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct  825  AACCAAACGTCTTTTTCTCTGCTTACCAACTTCAAAGGATGCGTATCCTGTTGGTAATAT  884

Query  155  ATTCTG-CTCTCTTGTACATTTAACTGTATGCATATGTCAGACAGAATGGTTGAATGTAC  213
            ||| || ||||||| ||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct  885  ATT-TGGCTCTCTTATACATTTAACTATATGCACATGTGAGACAGAATGGTTGAATGTAC  943

Query  214  TCATACGTGTGCTCAGAGACTCCCCAAATTTAAAAACTCTCATAATT  260
            | ||||||||||||||||| ||||| ||||||||||| |||| ||||
Sbjct  944  TTATACGTGTGCTCAGAGATTCCCCTAATTTAAAAACACTCAAAATT  990



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19855760855


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5