BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950305
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56420.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 1962 0.0
> AT5G56420.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22850584-22852740 REVERSE LENGTH=1673
Length=1673
Score = 1962 bits (1062), Expect = 0.0
Identities = 1237/1321 (94%), Gaps = 13/1321 (1%)
Strand=Plus/Plus
Query 1 TTTGTGACA-AATTGTGTAATCTAAATGGTTAGTTATAGGGATAGGCTTAGTCAGTTACC 59
||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 101 TTTGTGAAAGAATTGTGTAACCTAAATGGTTAGTTATAGAGATAGGCTTAGTCAGTTACC 160
Query 60 AGATGATTTCCTCTTACAGATATTATCATGGCTTCCAACAAAAGATGTTATGGTGACGAG 119
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 161 AGATGATTTCCTTTTACAGATATTATCATGGCTTCCAACAAAAGATGTTTTAGTGACGAG 220
Query 120 TCTTTTGTCGAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAATTATGATCT 179
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 221 TCTTTTGTCAAAACGATGGCGGTTTCTTTGGACATTAGTCCCTAGGCTCAACTATGATCT 280
Query 180 AAGGCTTCATGATAATACATATCCAAGGTTTTCACAGTTTGTTGATAGGTCTTTGTTACT 239
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 281 AAGGCTTCATGATAATACATGTCCAAGGTTTTCACAGTTTGTAGATAGGTCTTTGTTGCT 340
Query 240 ACACAAGGCTCCGACTTTGGAGAGTTTGAATATC-AGTATTGGTTCGCTATGTTATACCG 298
||||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| |
Sbjct 341 GCACAAGGCTCCGACTTTGGAGAGTTTGAATATCAAG-ATTGGTTCGATATGTTTTACTG 399
Query 299 CAGAGAAAGATGTTGGGGTATGGGTTAGAATTGGGGTAGACCGCTTCATGCGTGAGCTGA 358
|||||||||||||||| |||||||||||||| || ||||||||||| ||||||| ||||
Sbjct 400 CAGAGAAAGATGTTGGTGTATGGGTTAGAATAGGTGTAGACCGCTTTGTGCGTGAACTGA 459
Query 359 ATATCAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGCTTGTTTACTTGTA 418
| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 460 GTGTTAGTTATTGTTCTGGTGAAGAGCCTATTAGATTGCCTAAGTGTTTGTTTACTTGTT 519
Query 419 CAACGCTTGCGGTTCTGAAACTCGAAAACATAAGTCTTGTTGATGCTTCTTGTTATGTTT 478
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 520 CAACGCTTGCGGTTCTGAAACTCGAAAACATAACTCTTGAAGATGCTTCTTGTTATGTTT 579
Query 479 GCTTCCAATCCG-TCAAGACTTTGCACCTTCTAGATGTGAAGTATTTAGATGACCATTCA 537
||||||| | || ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 580 GCTTCCAGT-CGCTCAAGACTTTGCACCTTTTAGATGTGAAGTATTTAGATGACCAGTCA 638
Query 538 CTTCCTCGGATTATATCCAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 597
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 639 CTTCCTAGGATTATATCTAGCTGTTCTAGTCTTGAAGATTTGGTTGTGCAAAGATGCCCT 698
Query 598 GGTGACAACGTTAAAGTCGTTTCTATTACTGCTCCAT-GTTTAAAGAC-TCTATCTTTGC 655
|||||||| |||||||||||| || | ||||| || | ||||||| || | |||||||||
Sbjct 699 GGTGACAATGTTAAAGTCGTTACTGTGACTGCGCC-TAGTTTAAAAACGT-TATCTTTGC 756
Query 656 ATAAATCGTCACAAGCTTTTGAGGGAGATGATGATGGGTTCTTGATAGATGCCCCTAGAT 715
|||||||||| ||||||||||| ||||||||||||||||||||||||||| | |||| |
Sbjct 757 ATAAATCGTCTCAAGCTTTTGAAGGAGATGATGATGGGTTCTTGATAGATACTCCTAAAC 816
Query 716 TGAAGCGCGTAGACATTGAAGACTATTGGGGTGGCTTTTGTTACATTGAGAACATGCCTG 775
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 817 TGAAGCGTGTAGACATTGAAGACTATTGGGGTGGATTTTGTTACATTGAGAACATGCCTG 876
Query 776 AGGTGGTAGAGGCAAATGTCGATGTTATTTACAAAAATACAGAGAAACTTCTGGGATCTC 835
||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 877 AGGTGGTGGAGGCAAATGTCGATGTTATTTATAAAAATACGGAGAAACTTCTGGGATCTA 936
Query 836 TTACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCACTG 895
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 937 TCACCTCTGTCAAGCGCCTTGCGCTATGTCTGATCACTTCAGATGCTGCTTATCCCGCTG 996
Query 896 GTACCGTCTTCTCTCAGCTTGTTCATCTGGAACTATGCACATGTGCGCCACGATGGTGGG 955
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 997 GTACTATCTTCTCTCAGCTTGTTCATCTAGAACTATGCACATGTGCGCCACGATGGTGGG 1056
Query 956 ATTTACTTACCAGACTGTTTGAAGATTCACCTAAACTAAGAGTTCTTAAACTCCGCCAGA 1015
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1057 ATTTACTTACCAGACTGATTGAAGATTCACCTAAACTACGAGTTCTTAAACTCCGCCAGA 1116
Query 1016 AACATATTCGACGTGCCCCTAGTCCCCGGGCTTGTTGGAAGCAACCTGTTTCTCTTCCCA 1075
|||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct 1117 AACATATTCGACGTGCCCCTAGTCCCCGTGCTAGTTGGAAGCAACCTG---CTCTTCCCA 1173
Query 1076 AGTGTTTGTTATTTCACCTTGAGACGTTCAAGTGGGAACTATACGAAGGATCACAAAAGC 1135
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1174 AGTGTTTGTTATTTCATCTTGAGACCTTCAAGTGGGAACTATATGAAGGATCACAAAAGC 1233
Query 1136 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 AGAAAGAAGTAGCGACATTTATCTTAAAACACGCTATTCGATTGAAGACAGCTATTATCT 1293
Query 1196 CTCCAAAGCCCACCAGTACTCTGCTAGAGAAACATGAGATGCTCAAGGAGTTGTCATCCT 1255
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1294 CTCCAAAACCCACCAGTACTCTGCTAGAGAAACATGAAATGCTCAAGGATTTGTCATCCT 1353
Query 1256 CGCCGCGTGGTTCCAGTACATGCGAGCTCTTGTTCGACTGaaaaaaaGGAAGAAGAAATG 1315
| |||||||||||||||||||| |||||||||||||||||| | || |||||||||||||
Sbjct 1354 CACCGCGTGGTTCCAGTACATGTGAGCTCTTGTTCGACTGAGAGAA-GGAAGAAGAAATG 1412
Query 1316 A 1316
|
Sbjct 1413 A 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5