BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950308 Length=767 Score E Sequences producing significant alignments: (Bits) Value AT5G56440.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 638 0.0 > AT5G56440.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr5:22855742-22857117 REVERSE LENGTH=1293 Length=1293 Score = 638 bits (345), Expect = 0.0 Identities = 587/701 (84%), Gaps = 27/701 (4%) Strand=Plus/Plus Query 62 AGAGATTAACGGTCATAGACGGTTC-CTCTCAAGTTCCCGGAGATGATGTTGGGTTTGTT 120 ||||||||| | ||||||| | || |||||||||||| |||||||||||||||||||| Sbjct 605 AGAGATTAATAGCCATAGACTG-TCGCTCTCAAGTTCCTGGAGATGATGTTGGGTTTGTG 663 Query 121 ATCAAGGCTCCTTCTTTAAAGTCGTTAACGATTGCT-AACAAGT-T-----TAGTTGCTG 173 ||||| ||||| |||||||||||||| ||| ||| | ||| | | |||| | | Sbjct 664 ATCAAAGCTCCGTCTTTAAAGTCGTTGACG-TTGTTGAACTTTTCTCCCCATAGTGGGTT 722 Query 174 CTATTCATTAGTGAGTATGCCCTACCTCGTGAAGGCCTATATCAAGCTTCAACATGGTGA 233 | ||| ||||| | ||||| ||||||||||||| | ||||||| ||| ||||||||| Sbjct 723 CCGTTCTTTAGTAAAAATGCCAGACCTCGTGAAGGCTTCTATCAAGGTTCGACATGGTGA 782 Query 234 TTCTAAGAAT-TTTAAGGGATTG-CTTAACTCAGCTAAACACGTTTCCTTATGTTTGCAA 291 ||||||| || |||| ||| ||| |||| |||| | |||| | || |||||||| | ||| Sbjct 783 TTCTAAG-ATGTTTATGGG-TTGTCTTACCTCAACCAAACGCCTTGCCTTATGTCTACAA 840 Query 292 CCACCAATGGATTCATGTCCTATAGGCATCTTCAATCAGCTAGTGTCTCTAAATCTTTGT 351 |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 841 CCACCACTGGATTCATGTCCTATAGGCGTCTTCAATCAGCTAGTGTCTCTAAGTCTTTGT 900 Query 352 ACGTGCTCTTTAGATTGGTGTCGTCTTATACTCAGA-CATGCACCTAAACTCCGAGTTCT 410 || |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||| Sbjct 901 ACATGCTCTTTAGGTTGGTGTCGTCTTATACTCA-ACCATACACCTAAACTCCGAGTTCT 959 Query 411 CAGATTCGAGCTAAA-AGAAGTTAGGTTGTT-TCCAA-AACAAAATCCTCCACTCCAGAG 467 ||||||||| | ||| | ||| | || || | ||| | | ||||| || |||| Sbjct 960 CAGATTCGAAC-AAAGACAAGCAAAATT-TTAT-CAATTGCTAGATCCT---CTTAAGAG 1013 Query 468 ATGTTGCATCAGTTCTGTAGATGTCCAAGCTCAGTTGGAGCAGCTGAGTTCTGTTCCTCA 527 |||||||| |||||| |||||||| ||| |||| | |||||||| ||||||||||||| | Sbjct 1014 ATGTTGCAGCAGTTCCGTAGATGTTCAAACTCAATGGGAGCAGCCGAGTTCTGTTCCT-A 1072 Query 528 A-TGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGGTTACAAAGGAACACAAGCAG 586 | ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| || Sbjct 1073 AGTGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGATTACAAAGGAAGAGAAGTAG 1132 Query 587 AGAAAAAAGTGGTGATGTATTTACTAGAGAACTCACCACAGCTAAAGACAATGGCTATTA 646 |||||||||||||||||||||| ||||| ||||| | |||||| |||||||||||||||| Sbjct 1133 AGAAAAAAGTGGTGATGTATTTGCTAGAAAACTCTCGACAGCTTAAGACAATGGCTATTA 1192 Query 647 GATCCTTGAAATCGACCAAAGATAGTGAGAAACTCAAGATGCTGCAAGAGCTGTCGTCTA 706 ||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| | Sbjct 1193 GATCCCTGAAATCGACCAATGATAACGAGAAACTCAAGATGCTGCAAGAGCTATCGTCCA 1252 Query 707 CGCAGAGGAGCTCAACCAAATGTCGGCTTTCGTTCACCTGA 747 || |||| | || |||||| ||||||| ||||||||| Sbjct 1253 TACACAGGATTTGTACTAAATGTGGGCTTTCCTTCACCTGA 1293 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37273737074 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5