BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950308
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56440.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 638 0.0
> AT5G56440.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr5:22855742-22857117 REVERSE LENGTH=1293
Length=1293
Score = 638 bits (345), Expect = 0.0
Identities = 587/701 (84%), Gaps = 27/701 (4%)
Strand=Plus/Plus
Query 62 AGAGATTAACGGTCATAGACGGTTC-CTCTCAAGTTCCCGGAGATGATGTTGGGTTTGTT 120
||||||||| | ||||||| | || |||||||||||| ||||||||||||||||||||
Sbjct 605 AGAGATTAATAGCCATAGACTG-TCGCTCTCAAGTTCCTGGAGATGATGTTGGGTTTGTG 663
Query 121 ATCAAGGCTCCTTCTTTAAAGTCGTTAACGATTGCT-AACAAGT-T-----TAGTTGCTG 173
||||| ||||| |||||||||||||| ||| ||| | ||| | | |||| | |
Sbjct 664 ATCAAAGCTCCGTCTTTAAAGTCGTTGACG-TTGTTGAACTTTTCTCCCCATAGTGGGTT 722
Query 174 CTATTCATTAGTGAGTATGCCCTACCTCGTGAAGGCCTATATCAAGCTTCAACATGGTGA 233
| ||| ||||| | ||||| ||||||||||||| | ||||||| ||| |||||||||
Sbjct 723 CCGTTCTTTAGTAAAAATGCCAGACCTCGTGAAGGCTTCTATCAAGGTTCGACATGGTGA 782
Query 234 TTCTAAGAAT-TTTAAGGGATTG-CTTAACTCAGCTAAACACGTTTCCTTATGTTTGCAA 291
||||||| || |||| ||| ||| |||| |||| | |||| | || |||||||| | |||
Sbjct 783 TTCTAAG-ATGTTTATGGG-TTGTCTTACCTCAACCAAACGCCTTGCCTTATGTCTACAA 840
Query 292 CCACCAATGGATTCATGTCCTATAGGCATCTTCAATCAGCTAGTGTCTCTAAATCTTTGT 351
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 841 CCACCACTGGATTCATGTCCTATAGGCGTCTTCAATCAGCTAGTGTCTCTAAGTCTTTGT 900
Query 352 ACGTGCTCTTTAGATTGGTGTCGTCTTATACTCAGA-CATGCACCTAAACTCCGAGTTCT 410
|| |||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 901 ACATGCTCTTTAGGTTGGTGTCGTCTTATACTCA-ACCATACACCTAAACTCCGAGTTCT 959
Query 411 CAGATTCGAGCTAAA-AGAAGTTAGGTTGTT-TCCAA-AACAAAATCCTCCACTCCAGAG 467
||||||||| | ||| | ||| | || || | ||| | | ||||| || ||||
Sbjct 960 CAGATTCGAAC-AAAGACAAGCAAAATT-TTAT-CAATTGCTAGATCCT---CTTAAGAG 1013
Query 468 ATGTTGCATCAGTTCTGTAGATGTCCAAGCTCAGTTGGAGCAGCTGAGTTCTGTTCCTCA 527
|||||||| |||||| |||||||| ||| |||| | |||||||| ||||||||||||| |
Sbjct 1014 ATGTTGCAGCAGTTCCGTAGATGTTCAAACTCAATGGGAGCAGCCGAGTTCTGTTCCT-A 1072
Query 528 A-TGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGGTTACAAAGGAACACAAGCAG 586
| ||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| ||
Sbjct 1073 AGTGTTTGATTTCGAGTCTTGAAACTGTTGAGTGGATTGATTACAAAGGAAGAGAAGTAG 1132
Query 587 AGAAAAAAGTGGTGATGTATTTACTAGAGAACTCACCACAGCTAAAGACAATGGCTATTA 646
|||||||||||||||||||||| ||||| ||||| | |||||| ||||||||||||||||
Sbjct 1133 AGAAAAAAGTGGTGATGTATTTGCTAGAAAACTCTCGACAGCTTAAGACAATGGCTATTA 1192
Query 647 GATCCTTGAAATCGACCAAAGATAGTGAGAAACTCAAGATGCTGCAAGAGCTGTCGTCTA 706
||||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| |
Sbjct 1193 GATCCCTGAAATCGACCAATGATAACGAGAAACTCAAGATGCTGCAAGAGCTATCGTCCA 1252
Query 707 CGCAGAGGAGCTCAACCAAATGTCGGCTTTCGTTCACCTGA 747
|| |||| | || |||||| ||||||| |||||||||
Sbjct 1253 TACACAGGATTTGTACTAAATGTGGGCTTTCCTTCACCTGA 1293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5