BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950310

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16460.2 | Symbols: ATRDH2, ATMST2, MST2, ST2, STR2, RDH2 | ...   231    4e-60


> AT1G16460.2 | Symbols: ATRDH2, ATMST2, MST2, ST2, STR2, RDH2 
| rhodanese homologue 2 | chr1:5619641-5622624 REVERSE LENGTH=1379
Length=1379

 Score =  231 bits (125),  Expect = 4e-60
 Identities = 137/143 (96%), Gaps = 0/143 (0%)
 Strand=Plus/Plus

Query  33   GAATCCAGTGCTTCAAGTGATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAG  92
            |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  657  GAATCCAGTGTTTCAAATGATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAG  716

Query  93   AAAATCTATCAAGGACAAACAATTAGTCCAATAACTTTTCAGACTAAGTTCCGGTCACAT  152
            || ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct  717  AAGATCTATCAAGGACAAACAATTAGCCCAATAACTTTTCAGACGAAGTTCCGGCCACAT  776

Query  153  CTTGTATTGGCACTTGATCAGGT  175
            |||||||||||||||||||||||
Sbjct  777  CTTGTATTGGCACTTGATCAGGT  799



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27427844262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5