BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950315

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56490.1 | Symbols:  | D-arabinono-1,4-lactone oxidase famil...   272    9e-73


> AT5G56490.1 | Symbols:  | D-arabinono-1,4-lactone oxidase family 
protein | chr5:22871463-22873444 FORWARD LENGTH=1802
Length=1802

 Score =  272 bits (147),  Expect = 9e-73
 Identities = 170/181 (94%), Gaps = 2/181 (1%)
 Strand=Plus/Plus

Query  4    ACGTGACCGAGATAAGAATGGTGACTCCTGGTTTGGCTTCTGATGGGTATGTAAAGGTTC  63
            ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||
Sbjct  565  ACGTGACCGAGATAAGATTGGTGAGTCCCGGTTTGGCTTCTGATGGGTATGTAAAGGTTC  624

Query  64   -GGTTTCTTAGCGAGACTATAGATCCCGAGGAATTTCACGCAGCCAAAGTTTCTCTAGGC  122
             || |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| 
Sbjct  625  AGG-TTCTTAGCGAGACTATAGATCCGGAGGAATTTCGCGCAGCCAAAGTTTCTCTAGGT  683

Query  123  GTTCTTGGGGTTATCTCTCAAGTAACTTTCGAATTGCAACCGATGTTCAAGAGATCGTTA  182
            |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  684  GTTCTTGGTGTTATCTCTCAAGTAACTTTCGAATTGCAACCAATGTTCAAAAGATCGTTA  743

Query  183  A  183
            |
Sbjct  744  A  744



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5