BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950318

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56520.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   490    4e-138


> AT5G56520.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G55365.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:22885192-22886541 FORWARD LENGTH=1187
Length=1187

 Score =  490 bits (265),  Expect = 4e-138
 Identities = 303/322 (94%), Gaps = 0/322 (0%)
 Strand=Plus/Plus

Query  16   AAGACATGGTGTTCCGTGGCGACACGGTGGTGTCCGTAGCTCATTTATCGGCGGATATTT  75
            |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct  30   AAGACATGGTGTTCCGTGGCGACACGGTGGTGTCCGTAGCTCATATATCGGCTGAGATTT  89

Query  76   TTCAGCGATTTCGCTTAATTCCACAATCGGATCGAATCAGCAGCGGAGAGATGTTGCAAC  135
            |||||||||| || |  ||||| |  ||||||||||||||||||||||||||||| ||||
Sbjct  90   TTCAGCGATTACGGTGGATTCCGCCGTCGGATCGAATCAGCAGCGGAGAGATGTTACAAC  149

Query  136  TCGTTTGTTGTTTTCCGCTACAGCAATTGGGTCGATTCGTTTTGTGGTTCTGGAACCATA  195
            ||||||||||||||||||| |||||| |||||||||||||||| |||||||||||| |||
Sbjct  150  TCGTTTGTTGTTTTCCGCTTCAGCAACTGGGTCGATTCGTTTTATGGTTCTGGAACTATA  209

Query  196  TCTGTGTTCCACCTCCAGAGATTTTATATTTTGATGGTCGTCGTGATGATGACGATGATG  255
            |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  210  TCTGTGTTCCACCTCCGGAGATTTTGTATTTTGATGGTCGTCGTGATGATGACGATGATG  269

Query  256  GTTATGGATCATCTTCGTCTTCTTCGAATGTTACTCATCATCATAATTACTATCATCTTC  315
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  270  GTTATGGATCATCTTCGTCGTCTTCGAATGTTACTCATCATCATAATTACTATCATCTTC  329

Query  316  ATTTGGAGTGACCAAATTTCCG  337
            |||||||||||||||| |||||
Sbjct  330  ATTTGGAGTGACCAAAGTTCCG  351



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5