BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950320
Length=223
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56540.1 | Symbols: AGP14, ATAGP14 | arabinogalactan protein... 322 9e-88
> AT5G56540.1 | Symbols: AGP14, ATAGP14 | arabinogalactan protein
14 | chr5:22893151-22893642 FORWARD LENGTH=492
Length=492
Score = 322 bits (174), Expect = 9e-88
Identities = 204/218 (94%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 7 AAACAATACTAACAATGGAGGCAATGAAGATGAAGCTTTTCGTGACGGTTTTGGTGGCAA 66
||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 80 AAA-AATACTAACAATGGAGGCAATGAAGATGAAGCTTTACGTGGTGGTTTTGGTGGCAG 138
Query 67 TGATAGCGTTCTCTACCGTTCAACAGACGGTTGCAGTGGTTGACGCTCCCGCGCCGAGCC 126
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||
Sbjct 139 TGATAGCGTTCTCTACAGTTCACCAGACGGTTGCAGCGGTTGACGCTCCCGCGCCTAGCC 198
Query 127 CTACCTCCGATGCTTCCTCATTTATCCCTACTTTCTTTGCCTCCGTGGCGGTGATGGCCT 186
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 199 CTACCTCCGATGCTTCCTCATTTATCCCTACTTTCTTCGCCTCCGTAGCGGTGATGGCCT 258
Query 187 TTGGGTTTCT-CTTTTAAGAAGTTTCTTCTTTGCTTTT 223
|||| || || |||||||||||||||||||||||||||
Sbjct 259 TTGGATT-CTTCTTTTAAGAAGTTTCTTCTTTGCTTTT 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10003282051
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5