BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950324

Length=318
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G01800.1 | Symbols:  | COP1-interacting protein-related | ch...   169    2e-41
  AT4G00580.1 | Symbols:  | COP1-interacting protein-related | ch...   152    2e-36
  AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase...   104    5e-22


> AT2G01800.1 | Symbols:  | COP1-interacting protein-related | 
chr2:343766-345254 REVERSE LENGTH=915
Length=915

 Score =  169 bits (91),  Expect = 2e-41
 Identities = 117/129 (91%), Gaps = 3/129 (2%)
 Strand=Plus/Plus

Query  190  TGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA  249
            |||||| |||||||||||| |  |||||||||||||||||||||||||||||||||||||
Sbjct  741  TGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGA  800

Query  250  GAAGCCTAAGAAGAAGAAAAAGATCAAAGAAAGGCAAGACTCC-AGCTAAAGTAGATGCT  308
            ||||||||| ||||| ||||||| ||||||||| ||||||||| | |||||| ||||| |
Sbjct  801  GAAGCCTAAAAAGAA-AAAAAGAGCAAAGAAAGTCAAGACTCCGA-CTAAAGAAGATGGT  858

Query  309  CTAGTTGCT  317
            |||||||||
Sbjct  859  CTAGTTGCT  867


> AT4G00580.1 | Symbols:  | COP1-interacting protein-related | 
chr4:248713-250258 FORWARD LENGTH=954
Length=954

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 115/130 (88%), Gaps = 5/130 (4%)
 Strand=Plus/Plus

Query  190  TGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  248
            ||| ||| |||||||||||| |   |||||||||||||||||||||||||||||||||||
Sbjct  696  TGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG  754

Query  249  AGAAGCCTAAGAAGAAGAAAAAGATCAAAGAAAGGCAAGACTCC-AGCTAAAGTAGATGC  307
            |||||||||| ||||| ||| ||| ||||||||| ||||||||| | |||||| ||||| 
Sbjct  755  AGAAGCCTAAAAAGAA-AAATAGAGCAAAGAAAGTCAAGACTCCGA-CTAAAGAAGATGG  812

Query  308  TCTAGTTGCT  317
            ||||||||||
Sbjct  813  TCTAGTTGCT  822


> AT1G56100.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:20980369-20983979 REVERSE 
LENGTH=699
Length=699

 Score =  104 bits (56),  Expect = 5e-22
 Identities = 70/76 (92%), Gaps = 4/76 (5%)
 Strand=Plus/Plus

Query  214  CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAAGAAGAAGAAAAAG-A  272
            ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
Sbjct  465  CAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTGAGAAGCCTAA-AA-A-GAAAAAGGA  521

Query  273  TCAAAGAAAGGCAAGA  288
             ||||||||| |||||
Sbjct  522  GCAAAGAAAGTCAAGA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14778718206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5