BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950326

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56544.1 | Symbols:  | pseudogene of arginyl-tRNA synthetase...   104    8e-22


> AT5G56544.1 | Symbols:  | pseudogene of arginyl-tRNA synthetase 
| chr5:22894502-22895791 FORWARD LENGTH=605
Length=605

 Score =  104 bits (56),  Expect = 8e-22
 Identities = 98/116 (84%), Gaps = 12/116 (10%)
 Strand=Plus/Plus

Query  243  GGAAAGCTAGTGTTGAATCATGCGGATGAACGAGCACTAGGACTTCACT-C----GCTAC  297
            |||| ||||||||||||||||||||||||||||| |||||||||||||| |    |||||
Sbjct  256  GGAATGCTAGTGTTGAATCATGCGGATGAACGAGTACTAGGACTTCACTTCACTTGCTAC  315

Query  298  GATTTTC-T-----G-AGACTGTTGAGGAAGTATTTACCAATTTGTTACCAAGCGT  346
            ||||| | |     | ||||| ||||| |||||| |||||||||||||||||||||
Sbjct  316  GATTTGCGTTTTTTGCAGACTATTGAGAAAGTATGTACCAATTTGTTACCAAGCGT  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5