BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950331
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2529 0.0
AT4G29360.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 97.1 4e-19
> AT5G56590.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:22907319-22909559 FORWARD LENGTH=1846
Length=1846
Score = 2529 bits (1369), Expect = 0.0
Identities = 1496/1559 (96%), Gaps = 2/1559 (0%)
Strand=Plus/Plus
Query 1 AAGTGTGTAGTTACACAGCAATGGCGAGAGACTTCAAGCTCATCTTCTCCATTTCTCTTC 60
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 183 AAGTGTGTAGTTACTCAGCAATGGCGAGAGACTTCAAGCTTATCTTCTCCATTTCAATTC 242
Query 61 TGCTTCTGCTTCTTGACTGTTGCTACGGTGGCAAGGTCGGAGTTTGTTACGGAAGAAGCG 120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 243 TGCTTCTGCTTCTAGACTGTTGTTACGGTGGCAAGGTCGGAGTTTGTTACGGAAGAAGCG 302
Query 121 CCGACGATCTTCCAACACCGGCAAAAGTTGTTCAATTGATTCAACAGCACAACATCAAAT 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 303 CCGACGATCTTCCAACACCGTCAAAAGTTGTTCAATTGATTCAACAGCACAACATCAAAT 362
Query 181 ACGTTAGAATCTACGATTACAATTCTCAAGTCCTCAAAGCATTTGGAAACACAAGCATTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ACGTTAGAATCTACGATTACAATTCTCAAGTCCTCAAAGCATTTGGAAACACAAGCATTG 422
Query 241 AGCTTATGATTGGAGTTCCAAACTCTGATCTTAATGCTTTCTCACAATCCCAATCAAATG 300
|||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 423 AGCTAATGATTGGAGTTCCAAACTCTGATCTTAACGCTTTCTCTCAATCCCAATCAAATG 482
Query 301 TAGATACGTGGCTTAAGAACAGCGTCTTACCTTACTATCCAACGACCAAGATCACTTACA 360
| || || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 483 TGGACACCTGGCTTAAGAACAGCGTCTTACCATACTATCCAACGACCAAGATCACTTACA 542
Query 361 TTACCGTTGGAGCTGAGTCTACTGATGATCCACACATCAATGCTTCATCTTTTGTTGTTC 420
|||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 543 TTACCGTTGGAGCTGAATCTACTGATGATCCACACATCAATGCTTCGTCTTTCGTTGTCC 602
Query 421 CCGCGATGCAGAATGTGTTAACCGGTCTGAGGAAAGTCGGTTTGAGTAGAAGAATCAAGG 480
|||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 603 CCGCGATGCAGAATGTCTTAACCGCTCTGAGAAAAGTCGGTTTGAGTAGAAGAATCAAGG 662
Query 481 TTTCGACGACTCTTTCGCTCGGGATTCTCTCTAGATCTTTCCCTCCTTCTGCTGGAGCAT 540
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 663 TTTCGACTACTCTTTCCCTCGGAATTCTCTCTAGATCTTTCCCTCCTTCTGCTGGAGCAT 722
Query 541 TCAACAGCAGCTATGCTTATTTCTTGAGACCAATGTTAGAGTTCCTTGCAGAGAATAATT 600
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 723 TCAACAGCAGCTATGCTTATTTCTTGAGACCAATGTTAGAGTTTCTTGCAGAGAATAAGT 782
Query 601 CTCCTTTCATGATCGATCTTTATCCGTATTACGCTTATAGAGACTCTCCAAACAATGTGT 660
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 783 CTCCTTTCATGATCGATCTTTATCCGTACTACGCTTACAGAGACTCTCCGAACAATGTGT 842
Query 661 CTTTGGATTATGTGTTGTTTGAGTCTTCCTCTGAAGTGATTGACCCGAACACGGGTTTGC 720
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 843 CTTTGGATTATGTGTTGTTTGAGTCTTCCTCTGAAGTGATTGACCCAAACACGGGTTTGC 902
Query 721 TTTACAAGAACATGTTTGATGCTCAAGTTGATGCTCTCTATTATGCTCTCACGGCTTTAA 780
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 903 TTTACAAGAACATGTTTGATGCTCAAGTTGATGCTCTTTATTACGCTCTCACGGCTTTAA 962
Query 781 ACTTCCGAACAATCAAGATTATGGTTACCGAGACTGGATGGCCAACCAAAGGTTCACCGA 840
||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 963 ACTTCAGGACAATCAAGATTATGGTTACTGAGACTGGATGGCCAACCAAAGGTTCACCGA 1022
Query 841 AGGAGAAAGCTGCTGCGTCTCCTGACAACGCGGAGACATACAATTCAAACATAATCCATC 900
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1023 AGGAGAAAGCTGCTGCGTCTTCTGACAACGCGGAGACATACAATTCAAACATAATCCGTC 1082
Query 901 ATGTGGTTACCAACCAAGGCACACCTGCAAAACCAGGAGAGGCGATGAACGTTTATATAT 960
|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1083 ATGTAGTTACCAACCAAGGCACACCTGCAAAGCCAGGAGAGGCAATGAACGTTTATATAT 1142
Query 961 TCTCATTGTTCAACGAGAATCGAAAAGCGGGTTTAGATTCAGAGAGAAACTGGGGATTGT 1020
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1143 TCTCATTGTTCAACGAGAATCGGAAAGCGGGTTTGGATTCAGAGAGAAACTGGGGATTGT 1202
Query 1021 TCTACCCTGACCAGACGAGCGTTTATCAGTTGGATTTCACGGGAAAGAGTAACGGGTTTC 1080
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1203 TCTACCCTGACCAGACAAGTGTTTATCAGTTGGATTTCACGGGAAAGAGCAACGGGTTTC 1262
Query 1081 ACTCGAATTCGAGTGGTACAAACTCGAGTGGGAGTAGTAATAGCTGGTGCATTGCTTCCT 1140
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1263 ACTCTAATTCGAGTGGTACAAACTCAAGTGGGAGTAGTAATAGCTGGTGCATTGCTTCTT 1322
Query 1141 CTAAAGCTTCAGAGAGAGATCTGAAAGGTGCTTTGGATTGGGCTTGTGGTCCTGGAAATG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 CTAAAGCTTCAGAGAGAGATCTGAAAGGTGCTTTGGATTGGGCTTGTGGTCCTGGAAATG 1382
Query 1201 TTGATTGCACAGCTATTCAGCCAAGCCAGCCTTGTTTCCAACCAGATACTTTGGTTTCTC 1260
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1383 TTGATTGCACAGCTATTCAGCCAAGCCAGCCTTGTTTTCAACCAGATACTTTGGTTTCTC 1442
Query 1261 ATGCTTCTTTCGTGTTCAATAGCTATTTCCAGCAGAATAGAGCAACAGACGTTGCTTGTA 1320
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1443 ATGCTTCTTTCGTGTTCAATAGCTATTTCCAACAGAACAGAGCAACAGACGTTGCTTGCA 1502
Query 1321 GCTTTGGAGGAGCTGGTGTTAAGGTCAACAAGGACCCTAGTTATGACAAATGCATATACA 1380
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1503 GCTTTGGAGGAGCTGGTGTTAAAGTCAACAAGGACCCTAGTTATGACAAATGCATATACA 1562
Query 1381 TAACTGCAGGAGGGAACAAAACCAAGGCGACGAATGCAACTGCATTGACCTCCTCTGCTT 1440
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1563 TTACTGCAGGAGGGAACAAAACCAAGGCGACGAATGCAACTGCATTGACCTCCTCTGCTT 1622
Query 1441 CAACTAAAAGTGGAAACGAACCACTCCGATGGATTTTGAAACTCTGTCTCATGATCTCGT 1500
||||| | |||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1623 CAACTCCACGTGGAAACGAACTACTCCAATGGATTTTGAAACTCTGTCTCATGATCTCGT 1682
Query 1501 TGTTCTTCAGTTTGCACTCTATGAATTCACAGGCACTGTAACCAGAA-TCTGAAAGAAA 1558
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1683 TGTTCTTCAGTTTGCAAACTATGAATTCACAGGCACTGTAACC-GAAATCTGAAAGAAA 1740
> AT4G29360.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr4:14451421-14453915 REVERSE LENGTH=1974
Length=1974
Score = 97.1 bits (52), Expect = 4e-19
Identities = 190/253 (75%), Gaps = 24/253 (9%)
Strand=Plus/Plus
Query 1125 TGGTGCATTGCTTCCTCTA-AAGCTTCAG-AGA-GAGATCTGAAAG-GTGCTTTGGATTG 1180
||||| |||||||| || | ||||||| | | | | || ||| || ||| ||||| ||
Sbjct 1399 TGGTGTATTGCTTCTTC-ACAAGCTTCGGTA-ACG-GAACTG-CAGACTGCATTGGACTG 1454
Query 1181 GGCTTGTGGTCCTGGAAATGTTGATTGCACAGCTATTCAGCCA-AGCCAGCCTTG-TTTC 1238
||||||||||||||||||||||||||| ||||| |||| ||| | ||| ||||| |||
Sbjct 1455 GGCTTGTGGTCCTGGAAATGTTGATTGTTCAGCTGTTCAACCAGA-CCAACCTTGCTTTG 1513
Query 1239 CAACCAGATACT-TTGGTTTCTCATGCTTCTT-TCGTGTTCAATAGCT-ATTTCCAGCAG 1295
||||||||||| || | || || || |||| | | ||||| | || ||| ||| |||
Sbjct 1514 -AACCAGATACTGTTC-TCTCACACGCATCTTAT-GCATTCAACA-CTTATTACCAACAG 1569
Query 1296 AATAGAGCAA-CAGACGTTGCTTGTAGCTTTGGA-GGAGCTGGTGTT-AAGGTCAACAAG 1352
| |||||| ||| | | | ||| |||||| | ||||| | ||| ||| | | ||||
Sbjct 1570 AGCGGAGCAAGCAG-CATAGATTGCAGCTTTA-ATGGAGCCAGCGTTGAAGTTGA-CAAG 1626
Query 1353 GACCCTAGTTATG 1365
|| || |||||||
Sbjct 1627 GATCCAAGTTATG 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5