BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950332
Length=438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56600.1 | Symbols: PFN3, PRF3 | profilin 3 | chr5:22909685-... 630 3e-180
AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8... 272 2e-72
> AT5G56600.1 | Symbols: PFN3, PRF3 | profilin 3 | chr5:22909685-22910821
REVERSE LENGTH=704
Length=704
Score = 630 bits (341), Expect = 3e-180
Identities = 407/439 (93%), Gaps = 3/439 (1%)
Strand=Plus/Plus
Query 1 GAAGAAGGAAGAAGACGAAGATGTCGTGGCAGACTTACGTCGACGATCACTTGATGTGCG 60
|||||| |||||| || || |||||||||||||||||||||||||||||||| |||||||
Sbjct 93 GAAGAA-GAAGAAAACAAACATGTCGTGGCAGACTTACGTCGACGATCACTTAATGTGCG 151
Query 61 ACGTT-CAAGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGCGTCTGG 119
| ||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 152 ATGTTGC-AGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGTAGCGTCTGG 210
Query 120 GCTCAGAGCAGCAATTTCCCTCAGTTGAAGCCTGAGGAAATTCAGGGCATCAAAGACGAT 179
|||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 211 GCTCAGAGCAACAATTTTCCTCAGGTGAAGCCTGAGGAAATTCAGGGCATCAAAGACGAT 270
Query 180 TTTACTTCGCCTGGAATACTTGCCCCAACAGGATTGTTCCTTGGTGGCAACAAGTACATG 239
|||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 271 TTTACTACACCTGGAACACTTGCCCCAACAGGATTGTTCCTTGGTGGTAACAAGTACATG 330
Query 240 GTAATCCAAGGAGAGCCAAATGCCGTCATTCGAGGAAAGAAGGGAGCTGGTGGTGTTACC 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 GTAATCCAAGGAGAGCCTAATGCCGTCATTCGAGGAAAGAAGGGAGCTGGTGGTGTTACC 390
Query 300 ATCAAGAAAACCACCCAAGCTTTTGTCTTTGGTATCTATGAAGAACCAATGGCTCCTGGA 359
|||||||| |||||| |||||| || |||||||||||||| ||||||||| ||||||||
Sbjct 391 ATCAAGAAGACCACCTTAGCTTTGGTATTTGGTATCTATGATGAACCAATGACTCCTGGA 450
Query 360 CAATGCAATACGGTCGTGGAGAGTCTCGGTGACTACCTGATTGAATCGGGGCTCTGAAAC 419
|||||||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 451 CAATGCAATATGGTTGTGGAGAATCTCGGTGAGTACCTGATTGAATCGGGGCTCTGAAAC 510
Query 420 ACAAGCCGCTGCTATATTC 438
|||| ||| ||||||||
Sbjct 511 TTAAGCTGCTACTATATTC 529
> AT2G19760.1 | Symbols: PFN1, PRF1 | profilin 1 | chr2:8516787-8518167
REVERSE LENGTH=783
Length=783
Score = 272 bits (147), Expect = 2e-72
Identities = 345/437 (79%), Gaps = 28/437 (6%)
Strand=Plus/Plus
Query 1 GAAGAAGGAAGAAGACGAAGATGTCGTGGCAGA-CTTACGTCGACGATCA-CTTGATGTG 58
|||| |||||||||| ||||||||| ||||| | | |||||||| ||||| ||| |||||
Sbjct 82 GAAG-AGGAAGAAGAAGAAGATGTCTTGGCA-ATCATACGTCGATGATCACCTT-ATGTG 138
Query 59 CGACGTTC-AAGGCAACCGCCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGCGTCT 117
|| | || ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 139 TGATG-TCGAAGGCAACCATCTCACCGCCGCCGCAATTCTCGGCCAAGACGGCAGTGTCT 197
Query 118 GGGCTCAGAGCAGC-AA-TTTCCCTCAGTTGAAGCCTGAGGAAATTC-AGGGCATCAAAG 174
||||||||||| || || ||||| ||||||||||||| | ||||| | | || ||||| |
Sbjct 198 GGGCTCAGAGC-GCCAAATTTCC-TCAGTTGAAGCCTCAAGAAAT-CGATGGAATCAA-G 253
Query 175 ACG-ATTTT-ACTTCGCCTGGAATACTTGCCCCAACAGGATTGTTCCTTGGTGGC-AACA 231
| | | ||| | ||| || | ||||||||||| ||| | || || |||||| || |
Sbjct 254 AAGGACTTTGAGGA-GCCCGGGTTTCTTGCCCCAACCGGACTATTTCTCGGTGGCGAAAA 312
Query 232 AGTACATGGTAATCCAAGGAGAGCCAA--ATGCCGTCATTCGAGGAAAGAAGGGAGCTGG 289
| |||||||| |||||||| || | || | || || || ||||| ||||||||| ||||
Sbjct 313 A-TACATGGTTATCCAAGGTGAAC-AAGGA-GCTGTGATCCGAGGGAAGAAGGGACCTGG 369
Query 290 TGGTGTTACCATCAAGAAAACCACCCAAGCTTTTGTCTTTGG-TATCTATGAAGAACCAA 348
||||| || |||||||| || | ||||||||| |||||||| | |||| || |||||||
Sbjct 370 AGGTGTCACTATCAAGAAGACAAACCAAGCTTTGGTCTTTGGCT-TCTACGATGAACCAA 428
Query 349 TGGCTCCTGGACAATGCAA-TACGGTCGTGGAGAGTCTCGGTGACTACCTGATTGAATCG 407
|| || || |||||||| | ||| || || || ||||| || ||||| || || ||
Sbjct 429 TGACTGGAGGTCAATGCAACTT-GGTTGTCGAAAGGCTCGGGGATTACCTTATCGAGTCT 487
Query 408 GGGCTCTGAAACACAAG 424
| |||| |||| ||||
Sbjct 488 GAACTCTAAAAC-CAAG 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20810848086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5