BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950338
Length=230
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56670.1 | Symbols: | Ribosomal protein S30 family protein ... 342 7e-94
AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein ... 228 2e-59
AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein ... 215 2e-55
> AT5G56670.1 | Symbols: | Ribosomal protein S30 family protein
| chr5:22935211-22936060 REVERSE LENGTH=470
Length=470
Score = 342 bits (185), Expect = 7e-94
Identities = 216/231 (94%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 1 AAGAAGAGAAGTTAATAAATCATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAG 60
||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 59 AAGCAGAGAAGCTAATCAATCATGGGAAAGGTTCACGGATCTTTGGCTCGTGCCGGTAAG 118
Query 61 GTTAGAGGACAAACACCAAAGGTTGCGAAGCAAGATAAGAAGAAGAAGCCTAGAGGTCGT 120
|||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 119 GTTAGAGGACAAACTCCAAAGGTTGCGAAGCAAGATAAGAAAAAGAAGCCCAGAGGTCGT 178
Query 121 GCTCACAAGCGTTTGCAGCACAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTCGGAAAG 180
|||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 179 GCTCACAAGCGTCTGCAGCACAACCGTCGTTTTGTCACCGCAGTTGTTGGTTTCGGAAAG 238
Query 181 AAGAGAGGACCCAACTCTTCTGAGAAGTAGAAGAAGGTAGAGA-AAGAGAT 230
|||||||||||||||||||||||||| ||||||||| |||||| || ||||
Sbjct 239 AAGAGAGGACCCAACTCTTCTGAGAAATAGAAGAAGTTAGAGAGAA-AGAT 288
> AT2G19750.1 | Symbols: | Ribosomal protein S30 family protein
| chr2:8514954-8516138 FORWARD LENGTH=604
Length=604
Score = 228 bits (123), Expect = 2e-59
Identities = 173/197 (88%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 22 ATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTTAGAGGACAAACACC-AAA 80
||||||||||| || || || |||||||||||||||||||| ||||| || ||||| |||
Sbjct 84 ATGGGAAAGGTCCACGGTTCATTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACCTAAA 143
Query 81 GGTTGCGAAGCAAGATAAGAAGAAGAAGCCTAGAGGTCGTGCTCACAAGCGTTTGCAGCA 140
|| || ||||| || ||||||||||||||| | ||||||||||| |||||| |||| ||
Sbjct 144 -GTGGCTAAGCAGGACAAGAAGAAGAAGCCTCGTGGTCGTGCTCATAAGCGTCTGCAACA 202
Query 141 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTCGGAAAGAAGAGAGGACCCAACTCTTC 200
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||
Sbjct 203 CAACCGCCGTTTCGTCACCGCCGTTGTTGGTTTTGGCAAGAAGAGAGGACCAAACTCATC 262
Query 201 TGAGAAGTAGA-AGAAG 216
|||||||||| |||||
Sbjct 263 AGAGAAGTAGATAGAAG 279
> AT4G29390.1 | Symbols: | Ribosomal protein S30 family protein
| chr4:14464987-14465983 REVERSE LENGTH=495
Length=495
Score = 215 bits (116), Expect = 2e-55
Identities = 171/197 (87%), Gaps = 6/197 (3%)
Strand=Plus/Plus
Query 18 AATCATGGGAAAGGTTCATGGATCTTTGGCTCGTGCCGGTAAGGTTAGAGGACAAACACC 77
||||||||| ||||| || || || |||||||||||||||||||| ||||| || |||||
Sbjct 78 AATCATGGGTAAGGTACACGGTTCCTTGGCTCGTGCCGGTAAGGTGAGAGGTCAGACACC 137
Query 78 -AAAGGTTGCGAAGCAAGATAAGAAGAAGAAGCCTA-GAGGTCGTGCTCACAAGCGTTTG 135
||| || || ||||| ||||||||||||||||| | | || ||||||||||| | |||
Sbjct 138 GAAA-GTGGCAAAGCAGGATAAGAAGAAGAAGCC-ACGTGGCCGTGCTCACAAAAGGTTG 195
Query 136 CAGCACAACCGCCGTTTCGTCACCGCCGTTGTTGG-TTTCGGAAAGAAGAGAGGACCCAA 194
|| ||||| ||||||||||| |||||||||||||| ||| || |||||||||||||||||
Sbjct 196 CAACACAATCGCCGTTTCGTAACCGCCGTTGTTGGATTT-GGCAAGAAGAGAGGACCCAA 254
Query 195 CTCTTCTGAGAAGTAGA 211
|||||||||||||||||
Sbjct 255 CTCTTCTGAGAAGTAGA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10355156294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5