BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950347
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56770.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 468 3e-131
> AT5G56770.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: effector of transcription2 (TAIR:AT5G56780.1); Has
41 Blast hits to 41 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr5:22962994-22963989
REVERSE LENGTH=765
Length=765
Score = 468 bits (253), Expect = 3e-131
Identities = 499/611 (82%), Gaps = 43/611 (7%)
Strand=Plus/Plus
Query 28 ATGTCGTTTGGTCTATTATCGAAGATGGCTACGTTAAAGACTAACCATATACGACACACA 87
|||||||||| |||||||||||||||||| | ||| ||| |||||||||||||||||||
Sbjct 1 ATGTCGTTTGTTCTATTATCGAAGATGGCGAAGTTGAAGTTTAACCATATACGACACACA 60
Query 88 ATCAGTGGCATGCAAAAAATCACAACCATTATGCCAGTGATAAGTCAAG-TGTTGAACAA 146
|||| | ||| |||||||| ||||||||||||||| | |||||||| || | ||||||||
Sbjct 61 ATCATTAGCACGCAAAAAAGCACAACCATTATGCCGGGGATAAGTC-AGCTCTTGAACAA 119
Query 147 TAGGTTGATCGG-AAGAGAATTCAGTTCCGTCGCCGTCGTCCCCACTATGTTCAAGAGAG 205
||| |||||||| ||| |||||||||| | || | |||||||||||||||||||||||
Sbjct 120 TAGATTGATCGGAAAG-GAATTCAGTT-C--CG-C--CGTCCCCACTATGTTCAAGAGAG 172
Query 206 AAGACTACAAGAGGACTATATACGACG-C-CATTTTCTCCGATTGGAAGATTCTTACAAG 263
||||||||||| ||||||| ||||| | |||| |||| | ||| || ||||| |||
Sbjct 173 AAGACTACAAGCTGACTATACACGACATCGCATT--CTCCAAATGGCGGAATCTTATAAG 230
Query 264 GCCCAATGATTGGAACGACTTCAAGAATGGAAAAGAA-GGTGTCCGTAGATACAGACATG 322
| |||||||||||| || ||||| ||| |||||||| || |||||||||||||||||||
Sbjct 231 ACACAATGATTGGAAAGATTTCAATAATAGAAAAGAAAGG-GTCCGTAGATACAGACATG 289
Query 323 AGGACTTACCCCCT-ATATATCGTACGGGTCTATATGAGCTAGGCGTAG-CAGTCATCGG 380
|||||||||||||| | | | |||||||||| |||||||| || |||| | ||||||||
Sbjct 290 AGGACTTACCCCCTCA-ACGTTGTACGGGTCTGTATGAGCTCGGTGTAGGC-GTCATCGG 347
Query 381 TCAAGACGACCTAGGCCAAAAGTTTGATCCTGATAATGTTGTTCCTAC---ATATCTAGG 437
||||||| | ||||||||| ||||||||||||||| ||||| | |||| | ||
Sbjct 348 TCAAGACCA---AGGCCAAAACTTTGATCCTGATAATAATGTTCTTGGTGTATATGTCGG 404
Query 438 ACAAAGTGTAGACATGAAATCAAGACTCCAGGATTATGGAAGATGCGGTGGTCATTTGCC 497
|||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 405 ACAATGTGTAGACGTAAAATCAAGACTCCAGGATTATGGAAGACGCGGTGGTCATTTGCC 464
Query 498 CGCAAGTTTAT-TCGAAGACCTATCCTCGAAAGAATTCTGCATTTTATTTAGATATGCTA 556
| | |||||| | || ||| ||| |||| ||| || || || ||| |||| || | |
Sbjct 465 CTCGGGTTTATAT-GAGGACATATTCTCGGAAGGATACT-CAGTTT-TTTA--TA-G--A 516
Query 557 TGATGAGATCTAAATGGGAAGCTGCTGCAATAGAAGGGATGATTTTGAGTACAATTGATT 616
|| | | | | | |||||||||||| |||||||||| ||||||| || ||||||
Sbjct 517 TGG-GC-ACC-A---G--AAGCTGCTGCAACAGAAGGGATGCTTTTGAGCACTTTTGATT 568
Query 617 ATCCGTGGAAC 627
|| | ||||||
Sbjct 569 ATGCATGGAAC 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5