BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950348
Length=1500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56780.1 | Symbols: ATET2, ET2 | effector of transcription2 ... 2001 0.0
> AT5G56780.1 | Symbols: ATET2, ET2 | effector of transcription2
| chr5:22964265-22966241 REVERSE LENGTH=1571
Length=1571
Score = 2001 bits (1083), Expect = 0.0
Identities = 1344/1469 (91%), Gaps = 22/1469 (1%)
Strand=Plus/Plus
Query 22 ATGGAATTCGGCGACGGCGGTTCATTCGCCGTCGTCCCCACTGTCTTCAAGAGAGAAGAC 81
||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAATTCGGCGACGGCGTTTCCTTCGCCGTCGTCCCCACTGTCTTCAAAAGAGAAGAC 60
Query 82 TATAAGCGGACTAAACACGACGCCGTTTTCTCAAAGTGGCAGGT-GTTGATAGGATCAAA 140
|| || || |||||||||||| |||| ||||| ||||||||||| || |||||||| ||
Sbjct 61 TACAAACGAACTAAACACGACACCGTCTTCTCCAAGTGGCAGGTACTT-ATAGGATCCAA 119
Query 141 CGATTGGGAGGATTTCCAAAATGGGAAAGATGGTGTTGGTAGATACAGAGTCCACAACTT 200
||||||||| |||||| |||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 120 CGATTGGGAAGATTTCAAAAACGGAAAAGATGGTGTAGGTAGATACAGAGTCCAGAACTT 179
Query 201 ACCCCGCAAATCTTGCCCTGGTCTGTATGAGCTTGGTGTAGCGGTCATCGGTCAAGACCA 260
||| || |||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 180 ACCTCGTAAATCTTGTCCGGGTCTGTATGAGCTCGGTGTAGCGGTCATCGGTCAAGAACA 239
Query 261 AGGTCGAAAGCTTGAATCTGATGA-TGTTCTTGCTGT-GTATCTAGGACAAGCTGAAAGT 318
| |||||||||||||| | ||| | |||||||||| | |||||||||||||||||||||
Sbjct 240 ATGTCGAAAGCTTGAACCAGAT-ATTGTTCTTGCT-TCATATCTAGGACAAGCTGAAAGT 297
Query 319 GTTAGGTCTAGACTTCAGCGTTATGGAAGATCCGGTGCTCATTTGCGCAATGTTAACAAC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTTAGGTCTAGACTTCAGCGTTATGGAAGATCCGGTGCTCATTTGCGCAATGTTAACAAC 357
Query 379 CTTAACGACTGTGAAACCATTGAGTCTCCAGTTAAGAAGGCTGTAACCGGTGGTTTATTT 438
||||||||||||||||| ||||| |||||||||||| | |||| || || |||||||||
Sbjct 358 CTTAACGACTGTGAAACTATTGAATCTCCAGTTAAG--G-CTGTTACTGGAGGTTTATTT 414
Query 439 GAGGACATATTCTCGAAACAAGGCTCGATTTTATATAGATGGGCTCCGATGAGATCTAAG 498
|| |||||||| |||||| ||||||||||||||| ||||||||||||||| ||||||||
Sbjct 415 GAAGACATATTTTCGAAAGGAGGCTCGATTTTATACAGATGGGCTCCGATGGGATCTAAG 474
Query 499 AGAGAAGCTGAGGCAACAGAAGGAATGCTTTTGAGCACATTTGACTATGCTTGGAACAAA 558
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 475 AGAGAAGCTGAGGCAACAGAAGGGATGCTCTTGAGCACATTTGACTATGCTTGGAACAAA 534
Query 559 GGAAGTAATGGGGAGCGACGGCAGCTTGATTTACTCAAGAAGCTCGGTGATCGCGAGTTT 618
|||||||| ||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 535 GGAAGTAACGGGGAGCGAAGGCAGCTTGATTTGCTTAAGAAGCTCGGTGATCGCGAGTTT 594
Query 619 ATGAGCAAGAGAAAGTCCGGGATATCGCGAGTGTTGTTTCCTTTTCTTCGAAACCAAGTT 678
|||||||||||||||||||| ||||| ||| || |||||||||||||||| |||||||||
Sbjct 595 ATGAGCAAGAGAAAGTCCGGTATATCTCGAATGCTGTTTCCTTTTCTTCGGAACCAAGTT 654
Query 679 GGTATCAGAATCAAAGGAGAGAAGCATGTGCTTAAAGAAGAGAGAAAGCTAAGTTGTGAT 738
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 655 GGTATCAGAATAAAAGGAGAGAAGCATGTGCTTAAAGAAGAGAGGAAGCTAACCTGTGAT 714
Query 739 GTTGATGAAGAGAAGAGTAATAACTTCTTCACTTCAATACTCAAACTCACCAGGTCAAGA 798
||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |||
Sbjct 715 GTTGATGAAGAGAAGAGTAATAATTTCCTCACTTCAATACTCAAACTCACCCGGTCTAGA 774
Query 799 CCTCAACCGGTTTCAGACAGATTTGAAGAGGTTGATGGTTCTTGTTCTGAT-TCTGTTTG 857
|||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||
Sbjct 775 CCTCAACCGGTTTCAGACAGATTTGATGAGGTTGATGGTTCTTGTTCTGATAT-TGTTTG 833
Query 858 TGGAGTCTTACTTGAAAATGGTGGTTGTTGCAATAGAAGTCCTGTCAAAGGAAGAAAGAG 917
|||||||||||||||| ||||||| ||||||| ||||||||| |||||||| ||||||||
Sbjct 834 TGGAGTCTTACTTGAAGATGGTGGCTGTTGCATTAGAAGTCCAGTCAAAGGGAGAAAGAG 893
Query 918 ATGCATAGAGCATAAAGGTCAGAGAGTTTGCCGTGTTTCACCCGAAAAACAGACACCTCC 977
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 894 ATGCATAGAGCATAAAGGACAGAGAGTTTGCCGTGTTTCACCCGAAAAACAGACACCGCC 953
Query 978 ACAAC-CCGAGATTTTCACCGGACAAGATCATCACAATCACAGAGACTCTGATGTTATGT 1036
| || ||||||||||||| |||||||||||||||||||| | ||||||||||||| |||
Sbjct 954 A-AAGTCCGAGATTTTCACTGGACAAGATCATCACAATCATAAAGACTCTGATGTTGTGT 1012
Query 1037 GTGGAGTGATCTTACCTGACATGCAACCTTGCAATAAGAGACCTGTTCCTGGAAGAAAAC 1096
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1013 GTGGAGTGATCTTACCTGACATGGAACCTTGCAATAAGAGACCTGTTCCTGGAAGAAAAC 1072
Query 1097 GATGTGAGGATCATAAAGGCATGAGGATCAATGCTTTTCTCTTTCTTCTTAACCAGACAG 1156
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1073 GATGTGAGGATCATAAAGGCATGAGGATCAATGCTTTTCTTTTTCTTCTTAACCAAACTG 1132
Query 1157 ATCGTGAGAAAACCGTGAGAGACGAGATATCTAATCCCAAATCGCATACCGAGTCAAGGG 1216
| |||||||||||||| | |||||||| | || ||||| |||||||||||||||||| |
Sbjct 1133 ACCGTGAGAAAACCGTCAAAGACGAGAAACCTGATCCCGAATCGCATACCGAGTCAATCG 1192
Query 1217 AAGAAGAAGCTTCGACTCGCTTCTGTGAAGCTACAACAAAGAATGGGTTACCTTGCACAA 1276
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 AAGAAGAAGCTTTGACTCGCTTCTGTGAAGCTACAACAAAGAATGGGTTACCTTGCACAA 1252
Query 1277 GAAGTTCTCCTAAAGGAAGCAAAAGGTGTTGGCAACATAAAGAGAAAACTTCCTGCAA-A 1335
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || | |
Sbjct 1253 GAAGTTCTCCTAAAGGAAGCAAAAGGTGTTGGCAACATAAGGAGAAAACTTCCAGCGATA 1312
Query 1336 CAATCGCCGGAAAATGTTCAGCCAGGAG-CTG-AAAAACTCGTAGCCTGTGGAGTTAAGT 1393
| ||||||| | || ||||||||| || | | ||||| |||||| ||||||||||| |
Sbjct 1313 CT-TCGCCGGTATATTTTCAGCCAG-AGGCAGCAAAAAA-CGTAGCTTGTGGAGTTAAAT 1369
Query 1394 TATGTAATGGATTGATCTGTGAAAGATCTCCAGTCAAAGGTCGTAAGAGGTGTGAAGAGC 1453
|| | ||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct 1370 TAGGCAATGGATTGATCTGTGAGAGATCTCCGGTAAAAGGACGTAAGAGATGTGAAGAGC 1429
Query 1454 ACAAGGGAATGAGAATCATCACTTAACCT 1482
| |||||||||||||||| | || |||||
Sbjct 1430 ATAAGGGAATGAGAATCA-C-CT-AACCT 1455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73995603330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5