BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950350
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 132 2e-30
> AT5G10010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64910.1); Has
33260 Blast hits to 16857 proteins in 1270 species: Archae
- 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants
- 1371; Viruses - 424; Other Eukaryotes - 13285 (source:
NCBI BLink). | chr5:3127906-3131727 FORWARD LENGTH=1772
Length=1772
Score = 132 bits (71), Expect = 2e-30
Identities = 147/182 (81%), Gaps = 12/182 (7%)
Strand=Plus/Plus
Query 118 AGG-CAAGAGATACTCGATTGAAAATGATAGAAGAAATGAGTGAAGAAACTAAGGAAGCC 176
||| ||| |||| ||||| |||| |||||||||||||| ||||| |||||| |||||
Sbjct 1319 AGGCCAA-AGATGCTCGAAAGAAAGCAATAGAAGAAATGAGCGAAGATACTAAGCAAGCC 1377
Query 177 TTTCAAAACATGAAGTTCTACAAATTCTACCCTCAGCTTTCACCAGACGTC-CCTAGA-- 233
|||||||| |||||||||||||||||||||||||||| ||||||||| | || |||
Sbjct 1378 TTTCAAAAGATGAAGTTCTACAAATTCTACCCTCAGCCTTCACCAGATA-CACC-AGACG 1435
Query 234 T-TCAAGA--C--GTCACCGTGCATTAACCGATACTATGGGAATGCTCATCAAGTCCTAT 288
| || | | ||| || | |||||||||||||||||| || |||||| ||||||| |
Sbjct 1436 TCTCTGGTGTCCAGTCCCCATTCATTAACCGATACTATGGAAAGGCTCATGAAGTCCTTT 1495
Query 289 GA 290
||
Sbjct 1496 GA 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14376576214
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5