BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950353
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56840.1 | Symbols: | myb-like transcription factor family ... 1184 0.0
> AT5G56840.1 | Symbols: | myb-like transcription factor family
protein | chr5:22980693-22982342 FORWARD LENGTH=988
Length=988
Score = 1184 bits (641), Expect = 0.0
Identities = 713/747 (95%), Gaps = 7/747 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTCTCATTCATTGCAATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 TCTCTTTCTCATTCATTGCAATGGGCAGAAGATGCTCACACTGTGGAAACGTAGGACATA 136
Query 61 ACTCAAGAACATGTTCTTCTTACCAAACAGGAGTAATTAGACTCTTCGGTGTTCATCTAG 120
||||||||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||
Sbjct 137 ACTCAAGAACATGTTCTTCTTACCAAACAAGAGTAGTTAGGCTCTTTGGTGTTCATCTAG 196
Query 121 ACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 ACACCACAAGCTCTTCTCCGCCGCCTCCTCCTCCTCCCTCGATTTTGGCCGCTGCAATAA 256
Query 181 AGAAAAGCTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTC-TTTCGCC 239
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 257 AGAAAAGTTTCAGCATGGATTGCTTGCCGGCATGTTCCTCCTCTTCCTCTTCCTTT-GCT 315
Query 240 GGTTATCTCTCCGATGGTCTCGCCCACAAAGCACCCGATCGTAAAAAAGGGGTTCCATGG 299
|||||||||||||||||||||||||| ||| |||| || || ||||||||||||||||||
Sbjct 316 GGTTATCTCTCCGATGGTCTCGCCCATAAAACACCTGACCGCAAAAAAGGGGTTCCATGG 375
Query 300 ACGGAGGAAGAGCACCGGACGTTTCTAATTGGATTAGAGAAGCTTGGAAAAGGAGATTGG 359
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 376 ACGGCGGAAGAGCACCGGACGTTTCTAATTGGATTAGAAAAGCTTGGAAAAGGAGATTGG 435
Query 360 AGAGGAATCTCTAGAAACTACGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCT 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 436 AGAGGAATCTCTAGAAACTTCGTCGTCACAAAATCCCCGACACAAGTGGCAAGTCATGCT 495
Query 420 CAAAAGTACTTTCTCCGGCAAACCACCACTCGCCATCACAAGAGACGCCGCACCAGCCTC 479
||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 496 CAAAAATACTTTCTCCGGCAAACTACCACTCTCCATCACAAGAGACGCCGCACCAGCCTC 555
Query 480 TTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACAATTAAGAGTATGTGTAAT 539
||||||||||||||||||||||||||||||||||||||||| | |||||| || ||||||
Sbjct 556 TTTGATATGGTTTCGGCCGGCAATGTTGAAGAAAATAGTACTACTAAGAGGATATGTAAT 615
Query 540 GATCATATTGGGTCGACCTCAAAGGTTGTTTGGAAACAAGGATTACTTAATCCTCGTCTA 599
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 616 GATCATATTGGGTCGAGCTCAAAGGTTGTTTGGAAACAAGGATTACTCAATCCTCGTCTT 675
Query 600 GGATATCCAGATCCGAAAGTGA-CAGTATCCGGGTCCGGTAACTCCGGTGGCGGACTCGA 658
|||||||||||||||||||| | |||||||||| || |||||||||||||| ||||||
Sbjct 676 GGATATCCAGATCCGAAAGT-ATCAGTATCCGGCTCGGGTAACTCCGGTGG---ACTCGA 731
Query 659 TCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TCTTGAGCTGAAGCTTGCGTCCATTCAATCTCCTGAATCGAATATTAGACCTATTAGCGT 791
Query 719 TACGTGAATATATATAACACGTTATGA 745
||||||||| |||||||||||||||||
Sbjct 792 TACGTGAATCTATATAACACGTTATGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5