BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950363
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56920.1 | Symbols: | Cystatin/monellin superfamily protein... 972 0.0
AT5G56910.1 | Symbols: | Proteinase inhibitor I25, cystatin, c... 466 1e-130
> AT5G56920.1 | Symbols: | Cystatin/monellin superfamily protein
| chr5:23024896-23025915 FORWARD LENGTH=938
Length=938
Score = 972 bits (526), Expect = 0.0
Identities = 671/741 (91%), Gaps = 9/741 (1%)
Strand=Plus/Plus
Query 5 AGGGTTCCGATCTAATCATGGCGGACTCTGTTTTGATGGAGGTTAACTGTCGCCGGCCTC 64
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 88 AGGGTTCCGATCTAATCATGGCGGACTCTCTTTTGATGGAGGTTAACTATCGCCGGCCTG 147
Query 65 AAAAGATTCCGAAGTTGGACAAAGATTGCCAAGGATCCAAATCGTCCTCCAAACAGCGCG 124
|||||||||||||||||||| ||||||| ||||||| |||| || || ||||||||||
Sbjct 148 AAAAGATTCCGAAGTTGGACGAAGATTGTGAAGGATCGGAATCTTCGTCGAAACAGCGCG 207
Query 125 TGGTCAAGTGGGGAAAAGGGGAAGATGACGAATACTTACGACAGTATTTGTTGTTTCACT 184
||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||
Sbjct 208 TGGTCAAGTGGGGAACAGCGGAAGATGATGAATACTTGCGACAGTATTTGTTGTTTCACT 267
Query 185 ATCAATTTGAGAAAACTCAGGGTTTCTCGATAAAATGGGAGCAATTTGATTACCTA-TTC 243
||||||| |||||||||||||||||||||| |||||||||||||||||||| | | ||
Sbjct 268 ATCAATTCCAGAAAACTCAGGGTTTCTCGATTAAATGGGAGCAATTTGATTA-CAATTTT 326
Query 244 CGTAGTAGACCAATGGATAATTCGACAGACCAAATCAGCGAGACACAAAGCAATGCTGAA 303
||||||||| |||||||||| || || | |||||||||||| | |||||||||| | |
Sbjct 327 CGTAGTAGATCAATGGATAAGTCTCCAAATGAAATCAGCGAGAGAAAAAGCAATGCCGTA 386
Query 304 TTGATCCGTGAGATGACACTCACTGCTATCGAGAAACACAACGAAGCTCATGGAACAAAA 363
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 387 TTGATCCGTGAGATGACACTCACTGCTATCGACAAACACAACGAAGCTCATGGAACCAAA 446
Query 364 CTTGTGTTTGTGGAGCATGTTGAAGCAAATTACCAATTTACCAGCGGTCTTACCTGCTGG 423
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 447 CTTGTGTTTGTGGAGCATGTTGAGGCAAATTACCAATTGACCAGAGGTCTTACCTGCTGG 506
Query 424 TTAACATTCTGGGCTACAGATATGGCCTCGTCCCCTCCAGAGTCTAAAATCTATCAAGCA 483
|||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 507 TTAACATTTTGGGCTACAGATATGGCCTCTTCCCCTCCACAGTCTAAAATCTATCAAGCA 566
Query 484 AATGTGTGGCGTCGCGGAAC-ACGGTTTCATACTTTTATATTCAGGGTCAAGCCCACGGA 542
|||||||||||||||| || | ||||| ||||||||||||||| |||||||||| ||
Sbjct 567 CATGTGTGGCGTCGCGG-ACAAAACTTTCACACTTTTATATTCAGGCTCAAGCCCACAGA 625
Query 543 CGAAGAGATTGAATCTGTTGAAGTGCAACCTCCGTCTCCCATGCGTTATGAATTTGATAA 602
|||||||||||| ||||||||||||| || ||||||||||||| ||||||||| |||||
Sbjct 626 TGAAGAGATTGAAGCTGTTGAAGTGCAGCCACCGTCTCCCATGCTTTATGAATTAGATAA 685
Query 603 ACCACCGATTGTCTTTTCTCGACCTGGTCCTGAAGATGAAGCATTGCCTGGAGTCCCCTT 662
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 686 ACCACCGATTGTCTTTTCTCGACCTGGTCCTGAAGATGAAGCATTGCCTGGTGTCCCCTT 745
Query 663 TGTCTTCAATCGAACTGGAGCTGGTCTTGATCCCGATAGGTTCACTCCGAGCTGGTCTTG 722
|||||||||||||||||||||||||||||| |||||| ||| | | | || |||||
Sbjct 746 TGTCTTCAATCGAACTGGAGCTGGTCTTGACCCCGATTGGTAGAGT---A--TGCTCTTG 800
Query 723 ATCCCAATAGGAAAATGTATG 743
||||| |||||| ||||||||
Sbjct 801 ATCCCGATAGGATAATGTATG 821
> AT5G56910.1 | Symbols: | Proteinase inhibitor I25, cystatin,
conserved region | chr5:23022922-23024205 FORWARD LENGTH=946
Length=946
Score = 466 bits (252), Expect = 1e-130
Identities = 528/655 (81%), Gaps = 44/655 (7%)
Strand=Plus/Plus
Query 5 AGGGTTCCGATCTAATCATGGCGGACTCTGTTTTGATGGAGGTTAACTGTCGCCGGCCTC 64
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 58 AGGGTTCCGATCTAATCATGGCGGACTCTGTTTTGAAGGAGGTTAACTGTGGCCGGCCTG 117
Query 65 AAAAGATTCCGAAGTTGGACAAAGATTGCCAAGGATCCAAATCGTCCTCCAAACAGCGCG 124
||||||| |||||||||||||||| |||| ||||||| |||||||||| ||||| |
Sbjct 118 AAAAGATCCCGAAGTTGGACAAAGCTTGCGAAGGATCGAAATCGTCCTGGAAACATC--- 174
Query 125 TGGTCAAG-TGGGGAAAAGGGGAAGATGACGAATA-CTTACGACAGTATTTGTT-GTTTC 181
| |||| | || ||| | ||||||||| || || ||| |||||||||| ||| |||||
Sbjct 175 T---CAAGCTAGG-AAACGTGGAAGATGATGAGTATCTT-CGACAGTATT-GTTTGTTTC 228
Query 182 ACTATC-AATTTGAGAAAACTC-AGGGTTTCTCGATAAAATGGGAGCAATTTGATTACCT 239
|||| | |||| | ||| | | |||||||| || | | |||||| ||| ||| ||| |
Sbjct 229 ACTA-CGAATTCCATAAATC-CGAGGGTTTCACGGTTGATTGGGAGAAATATGACTACAT 286
Query 240 ATTCCGTAGTA-GACCAATGGATAATTCGACAGACCAAATCAGCGAGACACAAAGCAATG 298
|||| || || | || |||| ||||| || ||| | ||||||| | || || |||||
Sbjct 287 GTTCCATA-TAAGGCCGTTGGAAAATTC-ACC-ACCTA-TCAGCGATATACGAACCAATG 342
Query 299 CTGAAT-TGATCCGTGA-GATGACACTCACTGCTATCGAGAAACACAACGAAGCTCATGG 356
|||| | |||||||||| | |||||||| ||| || ||||||||||| |||||||||||
Sbjct 343 CTGA-TGTGATCCGTGATG-TGACACTCTTTGCCATTGAGAAACACAATGAAGCTCATGG 400
Query 357 AACAAAACTTGTGTTTGTGGAGCATGT-TGAAGCAAATTACCAATTTACCAGCGGTCTTA 415
| | |||||||||||||| |||||||| | | || |||| | ||||| ||| |||||
Sbjct 401 ATCTAAACTTGTGTTTGTCGAGCATGTCTCA-GCTAATTTCAAATTTGCCAATGGTCTC- 458
Query 416 C-CTGCTGGTTAACATTCTGGGCTACAGATATGGCCTCGTCCCCTCC-AGAGTCTAAAAT 473
| |||||||||||||||||||||||| ||||||||||| ||| |||| | | || | ||
Sbjct 459 CTCTGCTGGTTAACATTCTGGGCTACCGATATGGCCTCATCCGCTCCTACA-TCGCAGAT 517
Query 474 CTATCAAG-CAAA-TGTGTGGCGTCGCGGAACACGGTTTCATACTTTT-ATATTCAGGGT 530
|||||||| | || | | ||||||||||||| || |||| | | || || ||||||||
Sbjct 518 CTATCAAGTCGAACT-T-TGGCGTCGCGGAAAACAGTTTGAAA-TTCCCATCTTCAGGGT 574
Query 531 CAAGCCCACGGACGAAGAGATTGAATC-TGTTGAAGTGCAACCTCCGTCTCCCATGCGTT 589
|||||| | |||||||||||| || | |||||||||| |||| || |||||||||| ||
Sbjct 575 CAAGCCTAAGGACGAAGAGATGGA-TGATGTTGAAGTGAAACCACCCTCTCCCATGCCTT 633
Query 590 ATGA--ATT-TGATAAACCACCGATTGTCTTT-TCTCGACCTGGTCCTGAAGATG 640
|||| | | ||||||||||||| |||||||| | |||| ||| |||||||||||
Sbjct 634 ATGATGACTATGATAAACCACCGGTTGTCTTTGT-TCGAGCTGCTCCTGAAGATG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5