BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950365
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family p... 1733 0.0
> AT5G56930.1 | Symbols: emb1789 | CCCH-type zinc finger family
protein | chr5:23027892-23030565 REVERSE LENGTH=2085
Length=2085
Score = 1733 bits (938), Expect = 0.0
Identities = 1088/1159 (94%), Gaps = 15/1159 (1%)
Strand=Plus/Plus
Query 889 AGATGGATCCTGGAACCTCCATTaaaaaaaGGTCTGCGCCTTCTAAGGACGCAAAAGCCA 948
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 899 AGATGGATCCTGGAACCTCCATCAAAAAAAGGTCTGCGCCTTCTAAGGATGCAAAAGCCA 958
Query 949 GAAAGAGGGCAAAAGCTAGGA-AGAAAAGAGCTAAAGAGCGTATAGCCCTTGGCGTGAAA 1007
||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 959 GAAAGAGGGCAAAAGCTAGGATA-AAAAGAGCTCAAGAGCGTATAGCCCTTGGCGTGAAA 1017
Query 1008 AAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATAAAGTATTGTCGACACTAT 1067
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 AAGCTGAAACTGAAACCAGTAGCTCCAAAACCAAAGCCTATCAAGTATTGTCGACACTAT 1077
Query 1068 CTCAAGGGACGGTGCCATGAGGGAGATAAATGCAAATTTTCACATGATACAACT-CCGGA 1126
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1078 CTCAAGGGGCGGTGCCATGAGGGAGATAAATGCAAATTTTCACATGATACAA-TACCGGA 1136
Query 1127 AACCAAATCTTCGGCTTGCTGCTACTTTGCAACCCAATCATGTATGAAAGGAGATGATTG 1186
|||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1137 AACCAAATGTTCGCCTTGCTGCTACTTTGCAACCCAGTCATGTATGAAAGGAGATGATTG 1196
Query 1187 TCCTTTCGACCATGATCTCTCCAAATACCCCTGCAATAATTTCATTACTAAAGGTTTCTG 1246
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1197 TCCTTTCGACCATGATCTCTCCAAATACCCTTGCAATAATTTCATTACTAAAGGTTTCTG 1256
Query 1247 CCACAGGGGTGATAGTTGTTTGTTTTCGCACAAGGGTACTCCACAATCTGCTTCAGACAC 1306
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 CTACAGGGGTGATAGTTGTTTGTTTTCGCATAAGGGTACTCCACAATCTGCTTCAGACAC 1316
Query 1307 GCCGAGTGCAAATGTAACAGCCTCATCAACTAACATCACTGCAGCGTCGTTCTCTCCTCA 1366
|||||||||||||||||||| ||| || ||||| |||||||||||||| ||||| |||||
Sbjct 1317 GCCGAGTGCAAATGTAACAGTCTCGTCTACTAAGATCACTGCAGCGTCTTTCTCGCCTCA 1376
Query 1367 GAAAACAAACAAACAATCCGTGAGAGAGGCAATAGCCAAATTACCGG-GAATCCAAGCAA 1425
||||||||| ||||||||||||||||| || |||||||||||||||| || |||||||||
Sbjct 1377 GAAAACAAAAAAACAATCCGTGAGAGATGCCATAGCCAAATTACCGGCGA-TCCAAGCAA 1435
Query 1426 GAGTTTCAAGCTCTGTTGGGTTTTTGAAGCCCTTGAGTCAATCTAACCATA-GAAACCCA 1484
|||||||||||||||||| |||||||||||||| ||||| |||||||| | ||||| ||
Sbjct 1436 GAGTTTCAAGCTCTGTTGCGTTTTTGAAGCCCTCAAGTCATTCTAACCA-ACGAAACTCA 1494
Query 1485 TCTGATGCATTATCTCCAAAGATCAATGAACCTGTAACGCATCCCCAGGTTCTTCCTTTG 1544
|||||||||| |||| ||||||||||||||| |||||||| ||| ||||||| |||||||
Sbjct 1495 TCTGATGCATCATCTTCAAAGATCAATGAACATGTAACGCCTCCACAGGTTCCTCCTTTG 1554
Query 1545 AGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAACCTTC-CA 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1555 AGAAAACCATCCGTTGCTCCAAAGGGTATGAGTTTTCTCTCTTTAGACAAAACCT-CACA 1613
Query 1604 AGAGGATACGGTGAAAGTGTCTCCTGCGTCCAAGCGAAACACAGACAACTCTGATAATCA 1663
||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1614 AGAGGATACGGTGAAAGCGTCTTCTGCGTCCAAGCCAAACACAGACAACTCTGATAGTCA 1673
Query 1664 GACATTGAAGCAGTCACAACTGGGAAGCTCTCTTCCTCTGGTGCCTCCAAAAGGAATCAG 1723
|||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||||| ||
Sbjct 1674 GACATTGAAGCAGTCACAACAGGGAAGCTTTCTCCCTCTGGGGCCTCCAAAAGGAATAAG 1733
Query 1724 TTTCTTATCATTTGCATCAGAGGAACCAAAAACTCTGAATCGAGAGCCTCAAGAACCATC 1783
||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |
Sbjct 1734 TTTCTTATCATTTGCATCAGAAGAACAAAAAACTCTGAATCGAGAGCCTCAAAAACCAGC 1793
Query 1784 AAGTAGTAGAAATCTCAAGACAACTCCTAGCTCACACATTCAAAGTTCTCTACTCTCAGC 1843
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1794 AAGTAGTAAAAATCTCAAGACTACGCCTAGCTCACACATTCAAAGTTCTCTACTCTCAGC 1853
Query 1844 AATGAAACTAGCTGCAGAATTCGAATCCGCTAAAGTTGAAAGACGG-AACAATGATCCAA 1902
|||||||| |||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1854 CATGAAACTCGCTGCAGAATTCGAATCCGCTAAAGTTGAACGA-GGCAACAATGATCCAA 1912
Query 1903 CAGAAGCTGTAAATAAGAGCAATGTTACTACTGTTAACACGACAGTAACCAGAAACTCAG 1962
||||||||||||||||||||||||||||| ||| ||||| | ||||||||||||||||
Sbjct 1913 CAGAAGCTGTAAATAAGAGCAATGTTACT---GTTGACACGGCTGTAACCAGAAACTCAG 1969
Query 1963 GGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTTAGCCAAGGCAAAAACTGAT 2022
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1970 GGAACATATCTTCCAAGATTCTCGAGTTCTTGTCGAGCTTCAGCCACGGCAAAAACTGAT 2029
Query 2023 CTTTATTTGGTTTTTGAGA 2041
||| |||||||||||||||
Sbjct 2030 CTTAATTTGGTTTTTGAGA 2048
Score = 542 bits (293), Expect = 6e-153
Identities = 408/460 (89%), Gaps = 22/460 (5%)
Strand=Plus/Plus
Query 21 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCT-CTCGAATCGGACTTA 79
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||
Sbjct 1 ATGGAATCTTCCGTCGCTCCGTTTCCTCACCGACGCACGCATCTGC-CGAATCGAAATTA 59
Query 80 TCGTTCTTTGCTTCATCACCTCTGCTCGAGTTTCGATCGGGAGCCTCGAGTTTCGCTTGC 139
||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| |||||
Sbjct 60 TCGCTCTTTGCTTTATCACTTTTGCTCGAGTTTCGATCGGGAGCCTCAAATTTCTCTTGC 119
Query 140 TACACCGGCCGTTCTTCACGAGCTGGTCTTAAGAACAGAAATTGCTCCAGTGTCTCCGGG 199
|||||||| ||||| || |||||||||||| ||||||||||||||| || |||||||||
Sbjct 120 CACACCGGCAGTTCTCCAGGAGCTGGTCTTACGAACAGAAATTGCTCAAGAGTCTCCGGG 179
Query 200 AGAAACTTGCAAACCACCGGAGAATCTATCAATGGTA-G-AATCAAAA-TCCAATGGAGT 256
|||||||||| |||| ||||||||| ||||||| || | |||||||| || ||||||||
Sbjct 180 AGAAACTTGCGAACCGCCGGAGAATTTATCAAT--TACGGAATCAAAACTC-AATGGAGT 236
Query 257 GTCTGTTGATTTAAGAGGTGAGAA--T--------T--CGCAGGAAAAGAGTTTGATGCT 304
||||| ||||| ||| |||||||| | | | ||||||||||||||||||||
Sbjct 237 GTCTGGTGATTCAAGTGGTGAGAAGGTGGAAACAATTTCACAGGAAAAGAGTTTGATGCT 296
Query 305 TGGAGATGTTTTTGATGGAATTGACTTGCAAGATGCATCTGTTGGTATTAGACACACAGA 364
||||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 297 TGGAGATATTTGTGATGGAATTGACTTGCAAGATGCATCTGTTGTTAGTAGACACACAGA 356
Query 365 TTTTTTCGATAGCTTTGAGCTTATGATAAATGAAAATCCAGACTT-TGTTCCAGAAAGTT 423
||||||||||||||||||||||||||| ||||||| || ||| || ||||||||||||||
Sbjct 357 TTTTTTCGATAGCTTTGAGCTTATGATTAATGAAACTCAAGA-TTCTGTTCCAGAAAGTT 415
Query 424 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 463
||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTGTGAATCTCTTTGAGGCATTGGATGTGAATGACTATGA 455
Score = 460 bits (249), Expect = 2e-128
Identities = 295/318 (93%), Gaps = 0/318 (0%)
Strand=Plus/Plus
Query 554 TGAAAGTGATAAAAAGGTAGAGGAGGTTCCTAAATCTGCTGAATCTAATGAAGTTAAAAG 613
||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| |||
Sbjct 516 TGAAAGTGAGAAAAAGGCAGAGGAGGTTCCTAAATCTGTTGAATCTAATGAGGTTATAAG 575
Query 614 TTCTGGATTTTTGGAAGCTTGTGATGAAACAGTTCAAAGAGAGATGGAATTGGAGAAACC 673
||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct 576 TTCTGGAGTTTTGGAAGCTTGTAATGGAACAGTTCAAAGAGAGATGGAATTAGAGAAACC 635
Query 674 TGTTGATAGTACTCCGGTTTTGGTAGATTCCGTGTCTCGGATAGTTGAAGATGATGATGT 733
|||||||| || |||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 636 TGTTGATAATAGTCCGGTTTTGGTAGATTCTGTGTCTCGGATAGTTGGAGGTGATGATGT 695
Query 734 AGAAGAAGGAGAGATATCTGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAACC 793
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 696 AGAAGAAGGAGAGATATCAGGGGATGATAATGATGATATGCTTGTAGAAGATGATGAAAC 755
Query 794 AGTCGAAAGACATGAGGAGTGTCAGGTCTCACGAGATGGGATTGGTAACAGCCATCTCAC 853
|||||||||||||||||||| ||||||||||| |||||| | |||||| |||||||||||
Sbjct 756 AGTCGAAAGACATGAGGAGTATCAGGTCTCACAAGATGGAACTGGTAATAGCCATCTCAC 815
Query 854 AAGTCATGAGAGTTTTGG 871
|||||| ||||||||||
Sbjct 816 TAGTCATAAGAGTTTTGG 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101154098175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5