BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950366

Length=448
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G56940.1 | Symbols:  | Ribosomal protein S16 family protein ...   730    0.0  


> AT5G56940.1 | Symbols:  | Ribosomal protein S16 family protein 
| chr5:23030786-23032411 FORWARD LENGTH=712
Length=712

 Score =  730 bits (395),  Expect = 0.0
 Identities = 425/440 (97%), Gaps = 0/440 (0%)
 Strand=Plus/Plus

Query  6    AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG  65
            ||||||||||||||||||||||| || |||||| | ||||||||||||||||||||||||
Sbjct  79   AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG  138

Query  66   CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTCGAG  125
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  139  CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG  198

Query  126  GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  199  GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG  258

Query  186  TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC  245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  259  TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT  318

Query  246  CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT  305
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  319  CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT  378

Query  306  GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT  365
            |||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||
Sbjct  379  GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT  438

Query  366  AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA  425
            |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct  439  AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA  498

Query  426  TAATTCATTAGCCTTTTGTC  445
            | ||||||||||||| ||||
Sbjct  499  TGATTCATTAGCCTTCTGTC  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21313525576


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5