BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950366 Length=448 Score E Sequences producing significant alignments: (Bits) Value AT5G56940.1 | Symbols: | Ribosomal protein S16 family protein ... 730 0.0 > AT5G56940.1 | Symbols: | Ribosomal protein S16 family protein | chr5:23030786-23032411 FORWARD LENGTH=712 Length=712 Score = 730 bits (395), Expect = 0.0 Identities = 425/440 (97%), Gaps = 0/440 (0%) Strand=Plus/Plus Query 6 AAAGGGAGGAGAAACATGGTTGTGCGGATCAGATTATCGAGATTTGGATGCAAAAATCGG 65 ||||||||||||||||||||||| || |||||| | |||||||||||||||||||||||| Sbjct 79 AAAGGGAGGAGAAACATGGTTGTACGTATCAGACTGTCGAGATTTGGATGCAAAAATCGG 138 Query 66 CCATTTTTTAGGGTTATGGCCGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTCGAG 125 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 139 CCATTTTTTAGGGTTATGGCTGCTGATAGCAGATCTCCAAGAGACGGGAAGCATCTTGAG 198 Query 126 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 199 GTCTTAGGTTACTTCAATCCTTTGCCAGGCCAGGACGGTGGTAAGAGGATGGGTCTCAAG 258 Query 186 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGC 245 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 259 TTCGATCGAATTAAGTACTGGTTATCTGTTGGTGCTCAGCCATCAGACCCGGTTCAACGT 318 Query 246 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 CTCCTATTCAGATCCGGTTTACTTCCTCCTCCTCCAATGGTGGCTATGGGACGTAAAGGT 378 Query 306 GGAGCACGAGACACACGCCCTGTTGATCCAATGACTGGTCGCTACGTAGATGCAGAGAAT 365 |||||||||||||||||||| |||||||| |||||||||||||| || |||||||||||| Sbjct 379 GGAGCACGAGACACACGCCCAGTTGATCCGATGACTGGTCGCTATGTGGATGCAGAGAAT 438 Query 366 AAAACAGTTAATGCCAGTGATAACCAGCCTAAGGAAGAGGATACAGAAGACAAGAGTGCA 425 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 439 AAAACAGTTAATGCCAATGATAACCAGCCTAAGGAAGAGGATACAGAAGCCAAGAGTGCA 498 Query 426 TAATTCATTAGCCTTTTGTC 445 | ||||||||||||| |||| Sbjct 499 TGATTCATTAGCCTTCTGTC 518 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21313525576 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5