BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950369
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr... 2527 0.0
> AT5G56970.1 | Symbols: CKX3, ATCKX3 | cytokinin oxidase 3 | chr5:23044944-23048268
REVERSE LENGTH=1595
Length=1595
Score = 2527 bits (1368), Expect = 0.0
Identities = 1521/1595 (95%), Gaps = 10/1595 (1%)
Strand=Plus/Plus
Query 3 TTATTTCTCATaaaaaaaaTGGCGAGTTATAAGT-TTCTTTCACAAGTTCATCTTATA-C 60
||||||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||| |
Sbjct 8 TTATTTCTC--AAAAAAAATGGCGAGTTATAA-TCTTCGTTCACAAGTTCGTCTTATAGC 64
Query 61 TAATAACAATATTAATCATCGTTACTCTTTTAACTCCGATCACAACCAACACATCACCAC 120
|||||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct 65 -AATAACAATAGTAATCATCATTACTCTCTCAACTCCGATCACAACCAACACATCACCAC 123
Query 121 AACCATGGAATATTCTTTCTCGCAACGACTTCACCGGAAAGCTAACCACCGCCTCCTCCT 180
||||||||||||| ||||| | |||||| ||| ||||||| || ||| || |||||||||
Sbjct 124 AACCATGGAATATCCTTTCACACAACGAATTCGCCGGAAAACTCACCTCCTCCTCCTCCT 183
Query 181 CCGTCGAATCAGCCGCCATAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCGTCGAATCAGCCGCCACAGATTTCGGCCACGTCACCAAAATCTTCCCTTCCGCCGTCT 243
Query 241 TAAACCCTTCATCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTATGACTCTCAAT 300
||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 244 TAATCCCTTCCTCCGTTGAAGACATCACAGATCTCATAAAACTCTCTTTTGACTCTCAA- 302
Query 301 CT-TCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGTCAAGCCTCGGCT 359
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 303 CTGTCTTTTCCTTTAGCCGCTCGTGGTCACGGACACAGCCACCGTGGCCAAGCCTCGGCT 362
Query 360 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGCATCAAGGTG 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 AAAGACGGAGTTGTGGTCAACATGCGGTCCATGGTAAACCGGGATCGAGGTATCAAGGTG 422
Query 420 TCTAGGACCGGTTTATACGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 479
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTAGGACCTGTTTATATGTTGACGTGGACGCTGCGTGGCTATGGATTGAGGTGTTGAAT 482
Query 480 AAAACGTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACGGTC 539
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 483 AAAACTTTGGAGTTAGGGTTAACGCCGGTTTCTTGGACGGATTATTTGTATTTAACAGTC 542
Query 540 GGTGGGACGTTATCTAACGGCGGAATTAGTGGACAAACGTTTCGGTGCGGTCCACAGATC 599
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 543 GGTGGGACGTTATCAAACGGCGGAATTAGTGGACAAACGTTTCGGTACGGTCCACAGATC 602
Query 600 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAA 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTAATGTTCTAGAGATGGATGTTATTACTGGAAAAGGAGAGATTGCAACTTGTTCCAAG 662
Query 660 GACATAAACTCGGATCTTTTCTTCGCCGTGTTAGGAGGTTTGGGTCAATTCGGAATTCTA 719
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 663 GACATGAACTCGGATCTTTTCTTCGCGGTGTTAGGAGGTTTGGGTCAATTCGGCATTATA 722
Query 720 ACAAGAGCCAGAATTAAACTCGAAGTAGCTCCAAAAAGGGCCAAGTGGTTAAGGTTTCTA 779
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 723 ACAAGAGCCAGAATTAAACTTGAAGTAGCTCCGAAAAGGGCCAAGTGGTTAAGGTTTCTA 782
Query 780 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGATTGATATCGAAAACGGACGGT 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 783 TACATAGATTTCTCCGAATTCACAAGAGATCAAGAACGAGTGATATCGAAAACGGACGGT 842
Query 840 GTAGATTTCTTGGAAGGTTCCGTAATGGTGGACCATGGTCCACCGGATAACTGGAGATCC 899
||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 843 GTAGATTTCTTAGAAGGTTCCATTATGGTGGACCATGGCCCACCGGATAACTGGAGATCC 902
Query 900 ACGTATTATCCACCGTCCGATCACTTGAGGATTGCCTCAATGGTCAAACGACATCGTGTC 959
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 903 ACGTATTATCCACCGTCCGATCACTTGAGGATCGCCTCAATGGTCAAACGACATCGTGTC 962
Query 960 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ATCTACTGCCTTGAAGTCGTCAAGTATTACGACGAAACTTCTCAATACACAGTCAACGAG 1022
Query 1020 GAAATGGAGGAGTTAAGCGAGAGTTTGAACTATGTAAGAGGGTTTATGTACGAGAAAGAT 1079
|||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 1023 GAAATGGAGGAGTTAAGCGATAGTTTAAACCATGTAAGAGGGTTTATGTACGAGAAAGAT 1082
Query 1080 GTGACGTATATGGATTTCTTAAACCGGGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1139
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1083 GTGACGTATATGGATTTCCTAAACCGAGTTCGAACCGGAGAGCTAAACCTGAAATCCAAA 1142
Query 1140 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCCAAATCTCAAATTTCC 1199
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1143 GGCCAATGGGATGTTCCACATCCATGGCTTAATCTCTTCGTACCAAAAACTCAAATCTCC 1202
Query 1200 AAATTTGATGATGGTGTTTTCAAGGGTATTATCCTAAGAAATAACATTACTACCGGTCCC 1259
|||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct 1203 AAATTTGATGATGGTGTTTTTAAGGGTATTATCCTAAGAAATAACATCACTAGCGGTCCT 1262
Query 1260 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGAATGTCTGCCGCTATACCT 1319
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1263 GTTCTTGTTTATCCTATGAATCGCAACAAGTGGAATGATCGGATGTCTGCCGCTATACCC 1322
Query 1320 GAGGAAGATGTATTTTATGCGGTAGGGCTTTTAAGATCTGCGGGTTTTGACAATTGGGAG 1379
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1323 GAGGAAGATGTATTTTATGCGGTAGGGTTTTTAAGATCCGCGGGTTTTGACAATTGGGAG 1382
Query 1380 GCTTATGATCAAGAAAATATGGAAATATTAAAGTTTTGTGAGGATGGTAATATGGGGGTT 1439
|||| |||||||||||| ||||||||| | |||||||||||||||| |||||||||||||
Sbjct 1383 GCTTTTGATCAAGAAAACATGGAAATACTGAAGTTTTGTGAGGATGCTAATATGGGGGTT 1442
Query 1440 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1443 ATACAATATCTTCCTTATCATTCATCACAAGAAGGATGGGTTAGACATTTTGGTCCGAGG 1502
Query 1500 TGGGATATTTTCGTAAAGAGAAAATATAAATATGATCCCAAAATGATATTATCACCGGGA 1559
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1503 TGGAATATTTTCGTAGAGAGAAAATATAAATATGATCCCAAAATGATATTATCACCGGGA 1562
Query 1560 CAAAATATATTTCAATAAATAAACTATCGAGTTAG 1594
||||||||||||||| ||||||||| ||||||||
Sbjct 1563 CAAAATATATTTCAAAAAATAAACT--CGAGTTAG 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78865056195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5