BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950373
Length=741
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56990.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 634 0.0
> AT5G56990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Cystatin/monellin superfamily protein (TAIR:AT5G56920.1);
Has 38 Blast hits to 38 proteins in 2 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23060872-23062311
REVERSE LENGTH=883
Length=883
Score = 634 bits (343), Expect = 0.0
Identities = 579/690 (84%), Gaps = 27/690 (4%)
Strand=Plus/Plus
Query 60 GAAGAAGCCGAAGTTGGACAAAGCCTCCGGAGAATCGAGTTCCGGCTCCACATACCGCA- 118
||||||||||| |||||| ||| |||| | ||||| |||| ||||| ||||| ||| |
Sbjct 39 GAAGAAGCCGAGGTTGGAGAAATTCTCCAGCGAATCAAGTTACGGCTACACATTCCG-AG 97
Query 119 AACTCCGGAAATACGATCCGTACGACGATGAATACATACGACAGTACATCTTATACTACT 178
||||||||| |||||| || ||||||||||||||| |||||||||||||||||||||||
Sbjct 98 AACTCCGGAGATACGACCCTTACGACGATGAATACGTACGACAGTACATCTTATACTAC- 156
Query 179 ATCAGTTCCATAAGAGCGAGGGTTTCGTGATTGATTGGGATAATTTCGATTATT-GGTTC 237
|||| |||||||||||||||||||||||||||||||||||| || |||| || |||||
Sbjct 157 --CAGTACCATAAGAGCGAGGGTTTCGTGATTGATTGGGATAAATTGGATT-TTCGGTTC 213
Query 238 -AGTAATATACCTGTCATAGAGCCATATCC-TCTCTC-TCAGTACAGGACCAATGCTGAA 294
|| | || ||| |||| || |||| ||| ||| | | || ||| ||||||| ||||
Sbjct 214 GAG-ACTAGGCCTATCATGGATCCAT-TCCGTCT-TGATGTGTGCAGTACCAATGATGAA 270
Query 295 GTAATCCGTGATGTGGTT-TGCGGTGCCATTAGC-CAACACAATGCA-GATACGGGAACT 351
| |||| || |||| | | || ||| |||| | |||||||||| |||||||||| |
Sbjct 271 ATGATCCATGGCGTGGCTCTCCG-TGCTATTA-CACAACACAATGTTTGATACGGGAAGT 328
Query 352 AGGCTTGTGTTTGTCGATCACGTTTCGGCAAGTTACAGATTTTGTGCTGGTATGCTTTTT 411
|| ||| ||| ||||||||||| |||||||||||||| | ||||||||||| |||| |
Sbjct 329 CGGATTGAGTTGGTCGATCACGTGTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTAT 388
Query 412 TGGATAACATTTTGGGCTAGGGATTTGGCATCATCC-AGTCCCGAGCCTAAACTTTATCA 470
||| |||| |||| |||| |||||||||| |||||| | ||||||||||| |||||||||
Sbjct 389 TGGGTAACGTTTTTGGCTCGGGATTTGGCCTCATCCGA-TCCCGAGCCTAGACTTTATCA 447
Query 471 AACTAATGTTC-TCTGGTGTGGACCAAAAGTA-TGTGAGATTCAGATCTTCAGGCCCAAA 528
| |||| |||| ||| |||||||||| || ||| ||||| | |||||||||| || |
Sbjct 448 AGCTAAAGTTCGTCTC-TGTGGACCAAC-GTTCTGTCAGATTTATATCTTCAGGCTCAGA 505
Query 529 CCAACTGATGAAGAGATTGCTGCTGTTCAAGTGGATCCTCCTCCTCCATTGTATGATGAT 588
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 506 CCAACTGATGAAGAGATTGCTGCAGTTCAAGTGGATCCCCCTCCTCCATTGTATGATGAT 565
Query 589 GTCCCAGAGTTACCCACCATA-TTGTTCACCGTAACGGGTCCAGGGTCTGGTTACATGTC 647
| ||||||||||||||||||| || ||||| || || |||||||| || |||||||||||
Sbjct 566 GACCCAGAGTTACCCACCATACTT-TTCACTGTGACTGGTCCAGGATCGGGTTACATGTC 624
Query 648 CATACCCGAAGTTTCCTTCACTCGGATTCCTGCTGAAGTTGAGCCCGCGTCTTCATCAAA 707
||||||||||||| |||||||||||||||||| ||||||||||||| ||| ||| || |
Sbjct 625 TATACCCGAAGTTTTCTTCACTCGGATTCCTGCAGAAGTTGAGCCCGTGTCGTCACCATA 684
Query 708 ATCCACACCGTGAAAACCAAAACGCTAAAT 737
|||| |||||||||||| ||||| | ||||
Sbjct 685 ATCCTCACCGTGAAAACAAAAACTC-AAAT 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35967649252
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5