BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950376
Length=1349
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57015.1 | Symbols: ckl12 | casein kinase I-like 12 | chr5:2... 2237 0.0
AT4G26100.1 | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227... 1144 0.0
> AT5G57015.1 | Symbols: ckl12 | casein kinase I-like 12 | chr5:23071097-23074843
FORWARD LENGTH=1985
Length=1985
Score = 2237 bits (1211), Expect = 0.0
Identities = 1301/1346 (97%), Gaps = 0/1346 (0%)
Strand=Plus/Plus
Query 1 TTTCTGAATTGGTTATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTTGGCAGG 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 391 TTTCTGAATTGGTGATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTCGGCCGG 450
Query 61 AAGATTGGAAGTGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAA 120
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AAAATTGGAAGCGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAA 510
Query 121 GAAGTTGCAATCAAGCTTGAAAATGTGAAAACTAAACATCCGCAGCTGCTCTATGAATCG 180
||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 511 GAAGTTGCAATCAAGCTTGAAAATGTGAAGACGAAACATCCTCAGCTGCTCTATGAATCC 570
Query 181 AAGTTATACAGAATTCTACAGGGAGGAACTGGTGTTCCAAATGTCAAGTGGTTTGGTGTT 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 571 AAGTTATACAGAATTCTACAGGGAGGAACTGGTGTTCCAAATATCAAGTGGTTTGGTGTT 630
Query 241 GAAGGTGACTACAATGTTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACTTGTTC 300
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAAGGTGACTACAATACTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACTTGTTC 690
Query 301 AATTTCTGTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AATTTCTGTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATC 750
Query 361 AACCGTGTTGAGTATTTCCATTCGAAATCTTTCCTTCATCGAGATCTTAAGCCAGACAAT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 751 AACCGTGTTGAGTATTTCCATTCGAAATCTTTCCTTCACCGAGATCTTAAGCCAGACAAT 810
Query 421 TTTCTCATGGGTTTAGGAAGGCGCGCAAACCAGGTATACATCATCGACTTTGGTCTTGCA 480
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 811 TTTCTTATGGGTTTAGGAAGGCGCGCAAACCAGGTACACATCATCGACTTTGGTCTTGCA 870
Query 481 AAGAAATACCGGGATAATACTACCCATCAGCACATTCCCTACAGAGAAAATAAGAATCTG 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 871 AAGAAATACCGGGATAATACTACCCACCAGCACATTCCCTACAGAGAAAATAAGAATCTG 930
Query 541 ACTGGAACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 ACTGGAACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGG 990
Query 601 GATGACCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 GATGACCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGG 1050
Query 661 CAAGGACTTAAAGCTGGAACCAAGAAACAAAAGTATGAGAGAATCAGTGAAAAGAAAGTC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 CAAGGACTTAAAGCTGGAACCAAGAAACAAAAGTATGAGAGAATCAGTGAAAAGAAAGTC 1110
Query 721 TCTACATCAATTGAGTCCTTGTGCCGTGGTTACCCATCTGAATTCGCATCTTACTTCCAC 780
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1111 TCTACATCAATTGAGTCCTTGTGCCGTGGTTACCCATCCGAATTCGCATCGTACTTCCAC 1170
Query 781 TACTGCCGTTCGCTCCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTC 840
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 TACTGCCGATCGCTTCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTC 1230
Query 841 CGGGACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 CGGGACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTG 1290
Query 901 AAATATCAACAGTCACAGCTAACGGCTCCTCCATCCCGTGGCTTAGTAAGTCCCGCAGTT 960
||||||||||||||||||||||| |||||||||||||||||| |||||||||| || |||
Sbjct 1291 AAATATCAACAGTCACAGCTAACCGCTCCTCCATCCCGTGGCCTAGTAAGTCCTGCGGTT 1350
Query 961 GGAACCAGTTCGGGTTTGCCTCCCGGACTAACCAGCGTTGATAGATATGCAGGCGAGGAC 1020
||||||||| |||||||||||||||||||||||||| | |||||||| | |||||||||
Sbjct 1351 GGAACCAGTGCGGGTTTGCCTCCCGGACTAACCAGCATCGATAGATACGGAGGCGAGGAA 1410
Query 1021 GAAGGAGGGAGACCACCAATGGATTCATCACGAAGGAGAATGTCAGGAGCTCTTGAAAAC 1080
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1411 GAAGGAGGAAGACCACCAATGGATTCGTCACGAAGGAGAATGTCAGGAGCTCTTGAAAAC 1470
Query 1081 TCGGGCAACTTGTCATCTAGAGGCCCAATGATGCCAAGCTCGTCGCTGTTCGCACAATCA 1140
|| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1471 TCTGGCAACTTGTCATCTAGAGGCCCAATGATGCCAAGCTCGTCACTGTTTGCACAATCA 1530
Query 1141 GCAGGATCATCAAGGAGAGTAACATCCGAGGAGCTACAGAGATGCCGTACAGGCGCCGGA 1200
||||||||||| ||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct 1531 GCAGGATCATCGAGGAGAGTAACGTCAGAGGAGCTACAGAGATGCCGAACCGGCGCCGGT 1590
Query 1201 TTAAGAAACTCTCCGGCGGTTACAACGCCGGAAGGGAAGAGATCTTCTTCCACCAGAAAA 1260
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 TTAAGAAACTCTCCGGTAGTTACAACGCCGGAAGGGAAGAGATCTTCTTCCACCAGAAAA 1650
Query 1261 CATTACGATTCTGCCATCAAAGGCATTGAGACTCTCCAAGTCTCCGACGAAAGGTTTCAC 1320
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CATTACGATTCTGCTATCAAAGGCATTGAGACTCTCCAAGTCTCCGACGAAAGGTTTCAC 1710
Query 1321 CACCACTGATCCATCATCCATCCATC 1346
|||||||||| |||||||||||||||
Sbjct 1711 CACCACTGATACATCATCCATCCATC 1736
> AT4G26100.1 | Symbols: CK1, CKL1 | casein kinase 1 | chr4:13227450-13230797
REVERSE LENGTH=2077
Length=2077
Score = 1144 bits (619), Expect = 0.0
Identities = 933/1084 (86%), Gaps = 24/1084 (2%)
Strand=Plus/Plus
Query 10 TGGTTATTATCGATGGAGCCTCGTGTGGGAAACAAATATCGTCTTGGCAGGAAGATTGGA 69
|||||||| | ||||| ||||||||||| ||||| | |||||| ||| | ||||| ||
Sbjct 281 TGGTTATT-T--ATGGAACCTCGTGTGGGGAACAAGTTTCGTCTCGGCCGAAAGATCGGT 337
Query 70 AGTGGTTCATTTGGAGAGATCTATCTTGGTACTCATATTCAAACGAATGAAGAAGTTGCA 129
|||||||| ||||||||||||||||| |||||| ||||||| |||||||||||| | ||
Sbjct 338 AGTGGTTCGTTTGGAGAGATCTATCTCGGTACTAATATTCATACGAATGAAGAACTGGCT 397
Query 130 ATCAAGCTTGAAAATGTGAAAACTAAACATCCGCAGCTGCTCTATGAATCGAAGTTATAC 189
|| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 398 ATTAAGCTTGAAAATGTGAAGACAAAACATCCACAGCTGCTCTATGAATCGAAGTTATAC 457
Query 190 AGAATTCTAC-AGGGAGGAACTGGTGTTCCAAATGTCAAGTGGTTTGGTGTTGAAGGTGA 248
|| ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 458 AGGATTCTACAAGGG-GGAACTGGTGTTCCAAATGTCAAATGGTTTGGTGTTGAAGGGGA 516
Query 249 CTACAATGTTCTGGTGATGGATTTACTTGGGCCTAGTCTTGAAGACT-TGTTCAATTTCT 307
||| |||||| ||||||||||| |||| || || ||||||||||| | | |||||||| |
Sbjct 517 CTATAATGTTTTGGTGATGGATCTACTCGGACCAAGTCTTGAAGA-TCTCTTCAATTTTT 575
Query 308 GTAGCAGGAAACTTTCCTTGAAGTCTGTCCTCATGCTCGCAGATCAAATGATCAACCGTG 367
|||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 576 GTAGCAGGAAACTTTCATTGAAGTCTGTCCTCATGCTTGCTGATCAAATGATCAACCGTG 635
Query 368 TTGAGTATTTCCATTCGAAA-TCTTTCCTTCATCGAGATCTTAAGCCAGACAATTTTCTC 426
|||||| ||| ||||| ||| ||||||||||| |||||||||||||||||||| || |||
Sbjct 636 TTGAGTTTTTTCATTC-AAAGTCTTTCCTTCACCGAGATCTTAAGCCAGACAACTTCCTC 694
Query 427 ATGGG-TTTAGGAAGGCGCGCAAACCAGGTATACATCATCGACTTTGGTCTTGCAAAGAA 485
||||| || |||||||| || ||||||||||||||||| |||||||||||||| |||||
Sbjct 695 ATGGGCCTT-GGAAGGCGTGCGAACCAGGTATACATCATTGACTTTGGTCTTGCTAAGAA 753
Query 486 ATACCGGGATAATACTACCCATCAGCACATTCCCTACAGAGAAAATAAGAATCTGACTGG 545
|| |||||| ||| || |||||||||||||||||||| |||||||| || ||||| ||
Sbjct 754 GTATAGGGATAGTACAACACATCAGCACATTCCCTACAGGGAAAATAAAAACCTGACAGG 813
Query 546 AACTGCAAGATATGCTAGTATGAACACTCACTTGGGAATTGAGCAAAGCCGAAGGGATGA 605
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 814 AACTGCGAGATATGCTAGTATGAACACTCACTTGGGAATTGAACAAAGTCGAAGGGATGA 873
Query 606 CCTAGAATCTCTTGGTTACATTCTCATGTATTTCCTTAAAGGAAGTCTTCCATGGCAAGG 665
|| || |||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 874 TCTTGAGTCTCTTGGTTACATCCTTATGTATTTCCTCAAAGGAAGTCTTCCATGGCAAGG 933
Query 666 ACTTAAAGCTGGAACCAAGAAA-CAAAAGTATGAGAGAATCAGTGAAAAGAAAGTCTCTA 724
||| |||||||||||||| ||| ||||||||||| || || |||||||||||||| ||||
Sbjct 934 ACTGAAAGCTGGAACCAA-AAAGCAAAAGTATGAAAGGATTAGTGAAAAGAAAGTTTCTA 992
Query 725 CATCAATTGAGTCCTTGTGCCGTGGTTACCCATCTGAATTCGCATCTTACTTCCACTACT 784
|||| |||||| | || || |||||||||||||| ||||| ||||| || ||||||||||
Sbjct 993 CATCCATTGAGGCTTTATGTCGTGGTTACCCATCCGAATTTGCATCCTATTTCCACTACT 1052
Query 785 GCCGTTCGCTCCGGTTTGATGATAAACCAGATTACGGTTACCTCAAAAGAATATTCCGGG 844
| || ||||| ||||||||||||||||||||||||| ||| || ||||||||||| || |
Sbjct 1053 GTCGGTCGCTTCGGTTTGATGATAAACCAGATTACGCTTATCTGAAAAGAATATTTCGAG 1112
Query 845 ACCTCTTTATCCGCGAAGGGTTTCAATTCGATTATGTCTTTGACTGGACCATATTGAAAT 904
| ||||||||||| ||||||||||| || ||||| || ||||||||||| || |||||||
Sbjct 1113 ATCTCTTTATCCGTGAAGGGTTTCAGTTTGATTACGTGTTTGACTGGACAATCTTGAAAT 1172
Query 905 ATCAACAGTCACAGCTAACGGCTCCTCCATCCCGTGGCTTAGTAAGTCCCGCAGTTGGAA 964
||||||| ||||| ||||| ||||| ||||| |||| | | || ||| || || ||||
Sbjct 1173 ATCAACAATCACAACTAACCGCTCCCCCATCTCGTGCCCTC--AA-TCCTGCTGTGGGAA 1229
Query 965 CCAGTTCGGGTTTGCCTCCCGG-ACTAACCAGCGTTGATAGATATGCAGGCGAGGACGAA 1023
| ||| | | |||||||| || | | ||| | | |||||||| |||| ||||| |||
Sbjct 1230 CTAGTGCCGCATTGCCTCCGGGCATTT-CCAACATCGATAGATACACAGGGGAGGAAGAA 1288
Query 1024 GGAGGGAGACCACCA-ATGGATTCATCACGAAGGAGAATGTCAGGAGCTCTTGAAAACTC 1082
|| | || |||| | ||||| ||||| ||| ||||| | ||||| |||||||| |||||
Sbjct 1289 GG-GCGA--CCAC-ATATGGAATCATCTCGACGGAGAGTTTCAGGGGCTCTTGATAACTC 1344
Query 1083 -GGG 1085
|||
Sbjct 1345 AGGG 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66415321035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5