BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950378
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57030.1 | Symbols: LUT2 | Lycopene beta/epsilon cyclase pro... 2615 0.0
> AT5G57030.1 | Symbols: LUT2 | Lycopene beta/epsilon cyclase protein
| chr5:23077265-23080053 FORWARD LENGTH=1943
Length=1943
Score = 2615 bits (1416), Expect = 0.0
Identities = 1559/1626 (96%), Gaps = 17/1626 (1%)
Strand=Plus/Plus
Query 7 TTTGGAGGAGGAAAATGGAGTGTGTTGGGGCTCGGAATTTCGCAGCAATGGCGGTTTCAA 66
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 TTTGGAGGAGGAAAATGGAGTGTGTTGGGGCTAGGAATTTCGCAGCAATGGCGGTTTCAA 179
Query 67 CATTTCCGTCATGGAGTTCTCGAAGGAAATTTCCGGTGGTTAAGAGATACAGCGT-TAGG 125
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| | ||||
Sbjct 180 CATTTCCGTCATGGAGTTGTCGAAGGAAATTTCCAGTGGTTAAGAGATACAGC-TATAGG 238
Query 126 AATATTCGTTTCGGTTTATGTAGTGTCAGAGCTAGCGGCGGCGGAAGCTCCGGTAGTGAG 185
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 239 AATATTCGTTTCGGTTTGTGTAGTGTCAGAGCTAGCGGCGGCGGAAGTTCCGGTAGTGAG 298
Query 186 AGTTGTGTGGCGGTGAGAGAAGATTTCGCCGACGATGAAGATTTTGTGAAAGCTGGTGGT 245
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 299 AGTTGTGTAGCGGTGAGAGAAGATTTCGCTGACGAAGAAGATTTTGTGAAAGCTGGTGGT 358
Query 246 TCCGAGATTCTATTCGTTCAAATGCAGCAAAACAAAGATATGGATGAACAGTCTAAGCTT 305
|| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 359 TCTGAGATTCTATTTGTTCAAATGCAGCAGAACAAAGATATGGATGAACAGTCTAAGCTT 418
Query 306 GTTGATAAGTTGCCTCCTATATCAATTGGTGATGGTGCTTTGGATCTAGTGGTTATTGGT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTGATAAGTTGCCTCCTATATCAATTGGTGATGGTGCTTTGGATCTAGTGGTTATTGGT 478
Query 366 TGTGGTCCTGCTGGTTTAGCCTTGGCTGCAGAATCAGCTAAGCTTGGACTAAAAGTTGGA 425
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 479 TGTGGTCCTGCTGGTTTAGCCTTGGCTGCAGAATCAGCTAAGCTTGGATTAAAAGTTGGA 538
Query 426 CTCATTGGTCCAGATCTTCCTTTTACTAACAACTACGGTGTTTGGGAAGATGAATTCAAT 485
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 CTCATTGGTCCAGATCTTCCTTTTACTAACAATTACGGTGTTTGGGAAGATGAATTCAAT 598
Query 486 GATCTTGGGCTGCAAAAATGTATTGAGCATGTTTGGAGAGATACTATTGTGTATCTGGAT 545
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 599 GATCTTGGGCTGCAAAAATGTATTGAGCATGTTTGGAGAGAGACTATTGTGTATCTGGAT 658
Query 546 AATGACAATCCTATTACCATTGGCCGTGCTTATGGAAGAGTTAGTCGACGTTTACTTCAT 605
||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 659 GATGACAAGCCTATTACCATTGGCCGTGCTTATGGAAGAGTTAGTCGACGTTTGCTCCAT 718
Query 606 GAGGAGCTTTTGAGGAGGTGTGTCGAGTCAGGTGTTTCGTATCTTAGCTCGAAAGTTGAC 665
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 719 GAGGAGCTTTTGAGGAGGTGTGTCGAGTCAGGTGTCTCGTACCTTAGCTCGAAAGTTGAC 778
Query 666 AGCATAACAGAAGCTTCTGATGGTCTTAGACTTGTTGCTTGTGACGACAATAACGTCATT 725
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 AGCATAACAGAAGCTTCTGATGGCCTTAGACTTGTTGCTTGTGACGACAATAACGTCATT 838
Query 726 CCGTGCAGACTTGCCACTGTTGCTTCTGGAGCAGCTTCGGGAAAGCTCTTGCAATACGAA 785
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CCCTGCAGGCTTGCCACTGTTGCTTCTGGAGCAGCTTCGGGAAAGCTCTTGCAATACGAA 898
Query 786 GTTGGGGGACCTAGAGTCTGTGTCCAAACTGCATACGGCGTGGAGGTTGAGGTGGAAAAC 845
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 899 GTTGGTGGACCTAGAGTCTGTGTGCAAACTGCATACGGCGTGGAGGTTGAGGTGGAAAAT 958
Query 846 AGTCCATATGATCCAGAGCAAATGGTTTTCATGGATTACAGAGATTATACGAATGAGAAA 905
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 959 AGTCCATATGATCCAGATCAAATGGTTTTCATGGATTACAGAGATTATACTAACGAGAAA 1018
Query 906 GTTCGGAGCTTAGAAGCTGAGTATCCAACGTTTCTGTATGCCATGCCTATGACAAAGACA 965
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1019 GTTCGGAGCTTAGAAGCTGAGTATCCAACGTTTCTGTACGCCATGCCTATGACAAAGTCA 1078
Query 966 AGACTATTCTTTGAGGAGACATGTTTAGCCTCAAAAGATGTCATGCCCTTTGATTTGCTA 1025
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 AGACTCTTCTTCGAGGAGACATGTTTGGCCTCAAAAGATGTCATGCCCTTTGATTTGCTA 1138
Query 1026 AAAAAGAAGCTCATGTTAAGATTAGATACACTAGGAATTCGAATTCTAAAGACTTACGAA 1085
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 AAAACGAAGCTCATGTTAAGATTAGATACACTCGGAATTCGAATTCTAAAGACTTACGAA 1198
Query 1086 GAGGAATGGTCCTATATCCCAGTTGGTGGTTCCTTGCCAAACACCGAACAAAAGAATCTC 1145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GAGGAGTGGTCCTATATCCCAGTTGGTGGTTCCTTGCCAAACACCGAACAAAAGAATCTC 1258
Query 1146 GCCTTTGGTGCTGCGGCTAGCATGGTACATCCCGCAACAGGCTATTCAGTTGTGAGATCT 1205
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCTTTGGTGCTGCCGCTAGCATGGTACATCCCGCAACAGGCTATTCAGTTGTGAGATCT 1318
Query 1206 TTGTCTGAAGCTCCAAAATATGCATCAGTCATAGCGGAGATACTAGAACAAGAGACTCAG 1265
|||||||||||||||||||||||||||||||| || ||||||||| | |||| ||
Sbjct 1319 TTGTCTGAAGCTCCAAAATATGCATCAGTCATCGCAGAGATACTA-A----GAGA---AG 1370
Query 1266 ACTACTTCCTTCACCAAACAGATCAATAGTAATATTTCAAGACAAGCTTGGGATACTCTA 1325
| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1371 AG-ACT------ACCAAACAGATCAACAGTAATATTTCAAGACAAGCTTGGGATACTTTA 1423
Query 1326 TGGCCACCAGAAAGGAAACGACAAAGAGCATTCTTTCTCTTTGGTCTTGCACTAATAGTT 1385
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1424 TGGCCACCAGAAAGGAAAAGACAGAGAGCATTCTTTCTCTTTGGTCTTGCACTCATAGTT 1483
Query 1386 CAATTCGATACCGAAGGCATTAGAAGCTTCTTCCGTACTTTCTTCCGCCTTCCAAAATGG 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CAATTCGATACCGAAGGCATTAGAAGCTTCTTCCGTACTTTCTTCCGCCTTCCAAAATGG 1543
Query 1446 ATGTGGCAAGGGTTTCTAGGATCAACATTAACATCAGGAGATCTCGTTCTCTTTGCTTTA 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 ATGTGGCAAGGGTTTCTAGGATCAACATTAACATCAGGAGATCTCGTTCTCTTTGCTTTA 1603
Query 1506 TACATGTTTGTCATCTCACCAAACAATTTGAGAAAAGGTCTCATCAATCATCTCATCTCT 1565
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TACATGTTCGTCATTTCACCAAACAATTTGAGAAAAGGTCTCATCAATCATCTCATCTCT 1663
Query 1566 GATCCAACCGGAGCAACCATGATGAAAACCTATCTCAAAGTATGATTTTCTTATCAACTC 1625
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1664 GATCCAACCGGAGCAACCATGATAAAAACCTATCTCAAAGTATGATTTACTTATCAACTC 1723
Query 1626 TTAGGT 1631
||||||
Sbjct 1724 TTAGGT 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80571874725
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5