BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950383
Length=1987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57090.1 | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | Au... 3273 0.0
> AT5G57090.1 | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 |
Auxin efflux carrier family protein | chr5:23100693-23104735
FORWARD LENGTH=2295
Length=2295
Score = 3273 bits (1772), Expect = 0.0
Identities = 1918/1989 (96%), Gaps = 7/1989 (0%)
Strand=Plus/Plus
Query 1 TCGCCGG-AAAA-TAAAGCAAAATGATCACCGGCAAAGACATGTACGACGTTTTAGCGGC 58
||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 51 TCGCCGGAAAAAGTAAATCAAAATGATCACCGGCAAAGACATGTACGATGTTTTAGCGGC 110
Query 59 TATGGTGCCGCTATACGTTGCTATGATATTAGCCTACGGTTCGGTACGATGGTGGGGAAT 118
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 111 TATGGTGCCGCTATACGTTGCTATGATATTAGCCTATGGTTCGGTACGGTGGTGGGGGAT 170
Query 119 ATTTACACCGGACCAATGTTCCGGTATAAACCGGTTTGTTGCGGTTTTCGCAGTTCCTCT 178
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 171 ATTCACACCGGACCAATGTTCCGGTATAAACCGGTTCGTTGCGGTTTTCGCGGTTCCTCT 230
Query 179 TCTTTCTTTCCATTTCATCTCCTCCAATGATCCTTATGCAATGAATTACCACTTCCTCGC 238
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCTCTCTTTCCATTTCATCTCCTCCAATGATCCTTATGCAATGAATTACCACTTCCTCGC 290
Query 239 CGCTGATTCTCTTCAGAAAGTCGTTATCCTCGCCGCACTCTTTCTTTGGCAGGCGTTTAG 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TGCTGATTCTCTTCAGAAAGTCGTTATCCTCGCCGCACTCTTTCTTTGGCAGGCGTTTAG 350
Query 299 CCGCAGAGGAAGCCTAGAATGGATGATAACGCTCTTCTCGCTCTCAACACTACCAAACAC 358
|||||||||||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 351 CCGCAGAGGAAGCCTAGAATGGATGATAACGCTCTTTTCACTATCAACACTGCCTAACAC 410
Query 359 GCTGGTAATGGGAATCCCATTGCTTCGGGCGATGTACGGGGACTTCTCCGGTAACCTAAT 418
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 411 GTTGGTAATGGGAATCCCATTGCTTAGGGCGATGTACGGAGACTTCTCCGGTAACCTAAT 470
Query 419 GGTGCAGATCGTGGTGCTTCAGAGCATCATATGGTATACATTAATGCTCTTCTTGTTTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GGTGCAGATCGTGGTGCTTCAGAGCATCATATGGTATACATTAATGCTCTTCTTGTTTGA 530
Query 479 GTTCCGTGGTGCTAAGCTTCTGATCTCCGAGCAGTTCCCGGAGACGGCTGGTTCAATTAC 538
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 531 GTTCCGTGGGGCTAAGCTTCTCATCTCCGAGCAGTTCCCGGAGACGGCTGGTTCAATTAC 590
Query 539 TTCCTTCCGAGTTGATTCTGATGTTATCTCTCTCAATGGCCGTGAACCCCTCCAGACCGA 598
||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 591 TTCCTTCAGAGTTGACTCTGATGTTATCTCTCTTAATGGCCGTGAACCCCTCCAGACCGA 650
Query 599 TGCGGAGATAGGAGACGACGGAAAGCTACACGTGGTGGTTCGAAGATCAAGCGCCGCCTC 658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 651 TGCGGAGATAGGAGACGACGGAAAGCTACACGTGGTGGTTCGAAGATCAAGTGCCGCCTC 710
Query 659 ATCAATGATCTCATCATTCAACAAATCTCACGGCGGAGGACTTAACTCCTCCATGATAAC 718
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATCAATGATCTCTTCATTCAACAAATCTCACGGCGGAGGACTTAACTCCTCCATGATAAC 770
Query 719 GCCACGAGCTTCAAATCTCACCGGCGTAGAGATTTACTCCGTTCAATCGTCACGAGAGCC 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCCGCGAGCTTCAAATCTCACCGGCGTAGAGATTTACTCCGTTCAATCGTCACGAGAGCC 830
Query 779 GACGCCGAGAGCTTCGAGCTTTAATCAGACAGATTTCTACGCAATGTTTAACGCAAGCAA 838
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GACGCCGAGAGCTTCTAGCTTTAATCAGACAGATTTCTACGCAATGTTTAACGCAAGCAA 890
Query 839 AGCTCCGAGCCCTCGTCACGGTTACACTAATAGCTACGGAGGCGCCGGAGCTGGTCCCGG 898
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 891 AGCTCCAAGCCCTCGTCACGGTTACACTAATAGCTACGGCGGCGCTGGAGCTGGTCCAGG 950
Query 899 TGGAGATGTTTACTCGCTTCAGTCTTCCAAAGGCGTGACGCCAAGAACGTCTAATTTTGA 958
||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 951 TGGAGATGTTTACTCACTTCAGTCTTCTAAAGGCGTGACGCCGAGAACGTCAAATTTTGA 1010
Query 959 TGAGGAAGTTATGAAGACGGCAAAGAAAGCAGGAAGAGGAGGGAGAAGTATGAGTGGGGA 1018
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1011 TGAGGAAGTTATGAAGACGGCGAAGAAAGCAGGAAGAGGAGGCAGAAGTATGAGTGGGGA 1070
Query 1019 ATTATACAACAATAATAGTGTTCCGTCGTACCCACCACCGAACCCAATGTTCACGGGGTC 1078
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1071 ATTATACAACAATAATAGTGTTCCGTCGTACCCACCGCCGAACCCAATGTTCACGGGGTC 1130
Query 1079 AACGAGTGGAGCAAGTGGAGTCAAGAAAAAGGAAAGTGGTGGCGGAGGAAGCGGTGGAGG 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1131 AACGAGTGGAGCAAGTGGAGTCAAGAAAAAGGAAAGTGGTGGCGGAGGAAGCGGT---GG 1187
Query 1139 CGGAGGAGGAGTAGGAGGACAGAACAAGGAGATGAACATGTTCGTGTGGAGTTCGAGTGC 1198
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGGAGTAGGAGTAGGAGGACAAAACAAGGAGATGAACATGTTCGTGTGGAGTTCGAGTGC 1247
Query 1199 TTCTCCGGTGTCGGAAGCCAACGCGAGGAATGCTATGACCAGAGGTTCCTCCACCGATGT 1258
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1248 TTCTCCGGTGTCGGAAGCCAACGCGAAGAATGCTATGACCAGAGGTTCTTCCACCGATGT 1307
Query 1259 ATCCACCGACCCTAAAGTTTCTATTCCTTCTCACGACAACCTCGCTTCTAAAGCGATGCA 1318
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1308 ATCCACCGACCCTAAAGTTTCTATTCCTCCTCACGACAACCTCGCTACTAAAGCGATGCA 1367
Query 1319 GAATCTGATAGAGAACATGTCACCGGGAAGAAAAGGGCATGTGGAAATGGACCAAGACGG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAATCTGATAGAGAACATGTCACCGGGAAGAAAAGGGCATGTGGAAATGGACCAAGACGG 1427
Query 1379 TAATAACGAGGGAAAGTCACCTTACATGGGCAAAAAAGGTAGTGACGTGGAAGACGGCGG 1438
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1428 TAATAACGGGGGAAAGTCACCTTACATGGGCAAAAAAGGTAGCGACGTGGAAGACGGCGG 1487
Query 1439 TCCTGGTCCGAGGAAACAGCAGATGCCGCCGGCGAGTGTGATGACGAGACTAATACTGAT 1498
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1488 TCCCGGTCCTAGGAAACAGCAGATGCCGCCGGCGAGTGTGATGACGAGACTAATTCTGAT 1547
Query 1499 AATGGTTTGGAGAAAACTTATTAGAAACCCTAACACTTACTCTAGTCTCTTTGGCCTCGC 1558
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1548 AATGGTTTGGAGAAAACTCATTCGAAACCCTAACACTTACTCTAGTCTCTTTGGCCTTGC 1607
Query 1559 TTGGTCCCTAGTTTCCTTCAAGTGGAATATAAAGATGCCAACGATAATGAGTGGATCGAT 1618
||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 TTGGTCCCTTGTCTCTTTCAAGTGGAATATAAAGATGCCAACGATAATGAGTGGATCGAT 1667
Query 1619 TTCAATATTATCTGATGCTGGTCTTGGAATGGCTATGTTTAGTCTTGGTCTATTTATGGC 1678
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TTCGATATTATCTGATGCTGGTCTTGGAATGGCTATGTTTAGTCTTGGTCTATTTATGGC 1727
Query 1679 ATTGCAACCAAAGATTATTGCGTGCGGAAAGTCAGTAGCAGTGTTTGCGATGGCCGTAAG 1738
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1728 ATTGCAACCAAAGATTATTGCGTGCGGAAAATCAGTAGCAGGGTTTGCGATGGCCGTAAG 1787
Query 1739 GTTCTTGACCGGACCGGCCGTGATCGCCGCCACCTCAATTGCAATTGGTATTCGAGGTGA 1798
||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1788 GTTCTTGACTGGACCAGCCGTGATCGCAGCCACCTCAATAGCAATTGGTATTCGAGGTGA 1847
Query 1799 TCTCCTCCATATCGCCATCGTTCAGGCTGCTCTCCCTCAAGGAATTGTTCCTTTTGTTTT 1858
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1848 TCTCCTCCATATCGCCATCGTTCAGGCTGCTCTTCCTCAAGGAATCGTTCCTTTTGTTTT 1907
Query 1859 CGCCAAAGAATATAACGTCCATCCTGATATTCTCAGCACTGCGGTTATATTCGGAATGCT 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 CGCCAAAGAATATAACGTCCATCCTGATATTCTCAGCACTGCGGTTATATTCGGAATGCT 1967
Query 1919 GGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGGGGCTTTAAGTTATATAATC 1978
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1968 GGTTGCTTTGCCTGTAACAGTACTCTACTACGTTCTTTTGGGGCTTTAAGTTAT-TA-TC 2025
Query 1979 AAAACGTAT 1987
|||||||||
Sbjct 2026 AAAACGTAT 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98443268745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5