BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950384
Length=2806
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31480.1 | Symbols: | Coatomer, beta subunit | chr4:1526315... 806 0.0
AT4G31490.1 | Symbols: | Coatomer, beta subunit | chr4:1526853... 771 0.0
> AT4G31480.1 | Symbols: | Coatomer, beta subunit | chr4:15263154-15267847
FORWARD LENGTH=3423
Length=3423
Score = 806 bits (436), Expect = 0.0
Identities = 813/992 (82%), Gaps = 38/992 (4%)
Strand=Plus/Plus
Query 18 AAGATGGAGAAATCAT-GTACGC-TGCTAATTTACTATGACAAAGGAACTCCTGCAATTG 75
|||||||| ||||| | |||| | |||| || ||||||||||||| ||||| ||| |||
Sbjct 194 AAGATGGACAAATC-TAGTAC-CATGCTTGTTCACTATGACAAAGGGACTCCAGCAGTTG 251
Query 76 CGAACGAGATCAAAGAAGCTCTAGAAGGGAACGATGTAT-CTGCGAAAATCGATGCGTTG 134
| || ||||| ||||||||||| ||||| || ||||| | || ||| | ||||| ||
Sbjct 252 CTAATGAGATTAAAGAAGCTCTCGAAGGAAATGATGT-TGAAGCTAAAGTTGATGCCATG 310
Query 135 AAGAACGCAATCATGCTTTTGCTTAATGGTGAAACTC-TGCCACAGCTTTTCATCACTAT 193
||||| ||||| ||||||||||| ||||||||||| | | || ||||||||||| || ||
Sbjct 311 AAGAAGGCAATTATGCTTTTGCTGAATGGTGAAAC-CATTCCTCAGCTTTTCATAACCAT 369
Query 194 TATCAGATATGTTTTGA-CGACTGAAGACCACACAGTCCAGAAGCTACTGCTGCTTTTCC 252
||| |||||||| | | | |||| ||||||||| |||| ||||| ||| |||| | ||
Sbjct 370 TATAAGATATGTGCT-ACCTTCTGAGGACCACACAATCCAAAAGCTTCTGTTGCTGTACC 428
Query 253 TGGAGAC-AATCGAGAAA-ACCGATTCTAAAGGGAAGGTGTTACCTGAGATGATATTGAT 310
||||| | || || ||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct 429 TGGAG-CTGATTGA-AAAGACTGATTCTAAGGGGAAGGTGTTACCTGAAATGATTTTGAT 486
Query 311 ATGTCAGAATCTGAGGAACAACCTTCAGCATCCGAACGAGTACATCCGTGGAGTTAC-CT 369
||| |||||||| | || |||||||||||||| || ||||||||||||||||| || |
Sbjct 487 ATGCCAGAATCTTCGTAATAACCTTCAGCATCCTAATGAGTACATCCGTGGAGTGACAC- 545
Query 370 TGCGGTTCCT-TAGCC-GATTG-AGAGAGACTGAAGTTATGGAGCCTCTGATTCCGTCTG 426
|| |||| || | ||| || || || ||||||||| || |||||||| | | ||| || |
Sbjct 546 TGAGGTTTCTCT-GCCGGA-TGAAG-GAGACTGAAATTGTGGAGCCTTTAACTCCATCAG 602
Query 427 TGTTGCAGAATCTGGAGCATCGCCATCCGTTTGTCCGTAGGAATGCGATTTTGGCTATTA 486
|||| || |||||||||||||||||||| ||||| || |||||||| ||| |||| || |
Sbjct 603 TGTTACAAAATCTGGAGCATCGCCATCCATTTGTTCGCAGGAATGCCATTCTGGCCATCA 662
Query 487 TGTCGATTTATAAGCTCCCACAAGGTGACCAGCTC-TTGATAGATGCACCTGAAACGATT 545
||||||| |||||||| |||||||| ||||| ||| ||| | ||||| ||||||| |||
Sbjct 663 TGTCGATATATAAGCTTCCACAAGGCGACCAACTCTTTG-TGGATGCGCCTGAAATGATC 721
Query 546 GAGAAAGTTCTGGCTACCGAACAGGATCCCTCTGCTAAAAGAAACGCGTTTCTTATGCTC 605
||||||||||| | |||||||| ||||| ||||| || ||||| || ||||| ||||||
Sbjct 722 GAGAAAGTTCTATCAACCGAACAAGATCCTTCTGCCAAGAGAAATGCATTTCTAATGCTC 781
Query 606 TTCAATTGCGATCAAGACCGAGCTGTAAACTATCTTCTGA-CTAATGTTGATAGGGTTTC 664
|| | || | | |||| || || || || |||||||||| | |||||||| | ||||||
Sbjct 782 TTTACCTGTGCTGAAGAACGTGCAGTGAATTATCTTCTGAGC-AATGTTGACAAGGTTTC 840
Query 665 TGAGTGGAATGAATTGCTTCAGATGGTGGTTCTGGAATT-AATCAAGAAG-GTTTGTAGG 722
|| |||||||||| |||||||||||||| ||||| || | || |||| || |||| |
Sbjct 841 AGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGTTGATTC--GAAGTGTGTGTAAG 898
Query 723 ACCAAACCATCAGAGAAGGGGAAGTATATTAAGATTATTATAGCTCTGTTAAATGCGCCT 782
|| |||||| ||||||||||||| ||||||||||||||||| ||||||||| ||| ||
Sbjct 899 ACTAAACCAGCAGAGAAGGGGAAATATATTAAGATTATTATTTCTCTGTTAAGTGCTACT 958
Query 783 TCATCTGCAGTTACT-TATGAATGTGCCGGGACACTTGTTTCTCTATCATCTGCGCCC-A 840
|| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| ||| |
Sbjct 959 TCTTCTGCAGTTA-TCTATGAATGTGCTGGGACACTTGTTTCTCTCTCATCTGC-CCCTA 1016
Query 841 CCGCTATTAGAGCAGCTGCCAACACCTACTGCCAGCTTCTTCTTTCTCAGAGTGACAACA 900
| || ||| | || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1017 CTGCGATTCGGGCTGCTGCCAACACCTACTGCCAACTTCTTCTTTCTCAGAGTGACAACA 1076
Query 901 ATGTGAAGCTAATTGTGCTTGATAGGTTGAATGAGCTCAAAGCC-TCT-CACAGAGAGAT 958
|||||||||| ||| | || ||| ||||| ||||||| || | | | | |||||||| ||
Sbjct 1077 ATGTGAAGCTTATTTTACTCGATCGGTTGTATGAGCTTAA-GACAT-TGCACAGAGATAT 1134
Query 959 CATGGTTGAGATGATCATGGATGTGCTAAGAG 990
|||||||||| |||| || |||||||| ||||
Sbjct 1135 CATGGTTGAGTTGATAATAGATGTGCTCAGAG 1166
> AT4G31490.1 | Symbols: | Coatomer, beta subunit | chr4:15268533-15273147
FORWARD LENGTH=3306
Length=3306
Score = 771 bits (417), Expect = 0.0
Identities = 811/997 (81%), Gaps = 44/997 (4%)
Strand=Plus/Plus
Query 16 AAAAGATGGAGAAATCAT-GTACGC-TGCTAATTTACTATGACAAAGGAACTCCTGCAAT 73
|||||||||| ||||| | |||| | |||| || ||||||||||||| ||||| ||| |
Sbjct 114 AAAAGATGGACAAATC-TAGTAC-CATGCTTGTTCACTATGACAAAGGGACTCCAGCAGT 171
Query 74 TGCGAACGAGATCAAAGAAGCTCTAGAAGGGAACGATGTAT-CTGCGAAAATCGATGCGT 132
||| || ||||| ||||||||||| ||||| || ||||| | || ||| | |||||
Sbjct 172 TGCTAATGAGATTAAAGAAGCTCTCGAAGGAAATGATGT-TGAAGCTAAAGTTGATGCCA 230
Query 133 TGAAGAACGCAATCATGCTTTTGCTTAATGGTGAAACTC-TGCCACAGCTTTTCATCACT 191
||||||| ||||| ||||||||||| ||||||||||| | | || ||||||||||| ||
Sbjct 231 TGAAGAAGGCAATTATGCTTTTGCTGAATGGTGAAAC-CATTCCTCAGCTTTTCATTACC 289
Query 192 ATTATCAGATATGTTTTGACGACTGAAGACCACA-CAGTCCAGAAGCTACTGCTGCTTTT 250
||||| |||||||| || | |||||||||||| || |||| ||||| ||| |||| |
Sbjct 290 ATTATAAGATATGTGCTGCCTTCTGAAGACCACACCA-TCCAAAAGCTTCTGTTGCTGTA 348
Query 251 CCTGGAGAC-AATCGAGAAA-ACCGATTCTAAAGGGAAGGTGTTACCTGAGATGATATTG 308
||||||| | || || ||| || ||||| || ||||||||||| ||||| ||||| |||
Sbjct 349 CCTGGAG-CTGATTGA-AAAGACAGATTCGAAGGGGAAGGTGTTGCCTGAAATGATTTTG 406
Query 309 ATATGTCAGAATCTGAGGAACAACCTTCAGCATCCGAACGAGTACATCCGTGGAGTTAC- 367
||||| |||||||| | || ||||||||||||||||| ||||||||||||||||| ||
Sbjct 407 ATATGCCAGAATCTTCGTAATAACCTTCAGCATCCGAATGAGTACATCCGTGGAGTGACA 466
Query 368 CTTGCGGTTCCT-TAG-CCGATTG-AGAGAGACTGAAGTTA-TGGAGCCTCTGATTCCGT 423
| || |||| || | | | || || || ||||||||| || |||| ||| ||| ||| |
Sbjct 467 C-TGAGGTTTCTCT-GTCGGA-TGAAG-GAGACTGAA-ATAGTGGAACCTTTGACTCCAT 521
Query 424 CTGTGTTGCAGAATCTGGAGCATCGCCATCCGTTTGTCCGTAGGAATGCGATTTTGGCTA 483
| ||||| || |||||||||||||||||||| ||||| || |||||||| ||| |||| |
Sbjct 522 CAGTGTTACAAAATCTGGAGCATCGCCATCCATTTGTTCGCAGGAATGCAATTCTGGCAA 581
Query 484 TTATGTCGATTTATAAGCTCCCACAAGGTGACCAGCTCTT-GATAGATGCACCTGAAACG 542
| |||||||| ||||| || ||||| || ||||| ||||| | | ||||||||||||| |
Sbjct 582 TCATGTCGATATATAAACTTCCACATGGCGACCAACTCTTCG-TGGATGCACCTGAAATG 640
Query 543 ATTGAGAAAGTTCTGGCTACCGAACAGGATCCCTCTGCTAAAAGAAACGCGTTTCTTATG 602
|| ||||||||||| | || ||||| ||||| ||||| || ||||| || ||||| |||
Sbjct 641 ATCGAGAAAGTTCTATCAACAGAACAAGATCCTTCTGCCAAGAGAAATGCATTTCTAATG 700
Query 603 CTCTTCAATTGCGATC-AAGACCGAGCTGTAAACTATCTTCTGA-CTAATGTTGATAGGG 660
||||| | || | | |||| || || || || |||||||||| | |||||||| | ||
Sbjct 701 CTCTTTACCTGTG-CCGAAGAACGTGCAGTGAATTATCTTCTGAGC-AATGTTGACAAGG 758
Query 661 TTTCTGAGTGGAATGAATTGCTTCAGATGGTGGTTCTGGA-ATTAATCAAGAAG-GTTTG 718
|||| || |||||||||| |||||||||||||| ||||| | | || |||| || ||
Sbjct 759 TTTCAGACTGGAATGAATCACTTCAGATGGTGGTGCTGGAGCTGATTC--GAAGTGTGTG 816
Query 719 TAGGACCAAACCATCAGAGAAGGGGAAGTATATTAAGATTATTATAGCTCTGTTAAATGC 778
|| ||| |||||| | |||||||| || |||||||| |||||||| ||||||||| |||
Sbjct 817 TAAGACTAAACCAGCGGAGAAGGGAAAATATATTAAAATTATTATTTCTCTGTTAAGTGC 876
Query 779 GCCTTCATCTGCAGTTACT-TATGAATGTGCCGGGACACTTGTTTCTCTATCATCTGCGC 837
|||| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| |
Sbjct 877 TACTTCTTCTGCAGTTA-TCTATGAATGTGCTGGGACACTTGTTTCTCTCTCATCTGC-C 934
Query 838 CC-ACCGCTATTAGAGCAGCTGCCAACACCTACTGCCAGCTTCTTCTTTCTCAGAGTGAC 896
|| || |||||| |||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 935 CCTACTGCTATTCGAGCTGCTGCCAACACCTACTGCCAACTTCTTCTTTCTCAGAGTGAC 994
Query 897 AACAATGTGAAGCTAAT-TGTGCTTGATAGGTTGAATGAGCTCAAAGCC-TCT-CACAGA 953
|||||||||||||| || | |||| ||| ||||| ||||||| || | | | | ||||||
Sbjct 995 AACAATGTGAAGCTTATCT-TGCTCGATCGGTTGTATGAGCTTAA-GACAT-TGCACAGA 1051
Query 954 GAGATCATGGTTGAGATGATCATGGATGTGCTAAGAG 990
|| |||||||||||| |||| || |||||||| ||||
Sbjct 1052 GATATCATGGTTGAGCTGATAATCGATGTGCTCAGAG 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139413934597
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5