BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950385
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57100.1 | Symbols: | Nucleotide/sugar transporter family p... 1899 0.0
> AT5G57100.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr5:23106302-23108795 REVERSE LENGTH=1789
Length=1789
Score = 1899 bits (1028), Expect = 0.0
Identities = 1143/1198 (95%), Gaps = 9/1198 (1%)
Strand=Plus/Plus
Query 18 CAAATGTTACTGACACCTAAAATGTTTAGTTCTTGGCTTCGAAAAGATGTGAAGAAGATT 77
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 353 CAAATGTTACTGACACCTAAGATGTTTAGTTCTTGGCTTCGACAAGATGTGAAGAAGATC 412
Query 78 CTCAAACGCAAAGACAGTGATGCTGGTGAACGAGGAAAAGCACTT-GAGGACTTGAGAGC 136
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 413 CTCAAACGCAAAGACAGTGATGCTGGTGAACGAGGAAAAGCA-TTGGAGGACTTGAGAGC 471
Query 137 ATCGTTATTCAACAGATTCCGTTCACCGGAAACTCCAAAAAGACAGCAACAACAACAACA 196
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 472 ATCGTTATTCAACAGATTCCGTTCACCGGAAACTCCAAAGAGACAGCAACAACAACAACA 531
Query 197 TCGTATCTGTGGCCCTACTGTTGCTCTTACTTTCAATTTCATTGTTGCTATTAGCATTAT 256
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 532 TCGTATCTGTGGCCCAACTGTTGCTCTTACTTTCAATTTCGTTGTTGCTATTAGCATTAT 591
Query 257 CTTCGTCAACAAATGGGTGCTTAAAAATATAGGCTTTGAGTTTCCAGTGTTCCTCACATT 316
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTTCATGAACAAATGGGTTCTTAAAAATATAGGCTTTGAGTTTCCAGTGTTCCTCACATT 651
Query 317 CATTCACTACATTGTAGCTTATCTACTAATGGCTCTTCTCAAATCCTTTTCGCTCCTTCC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CATTCACTACATTGTAGCTTATCTACTAATGGCTCTTCTCAAATCCTTTTCGCTCCTTCC 711
Query 377 CGCTTCACCGCCCTCCACGAAATCATCGTCT-CTTCCGCTTTACACTCTTGGCATTGTAA 435
||||||||||| |||||||||||||||| | |||||||| || ||||||||||||||||
Sbjct 712 TGCTTCACCGCCTTCCACGAAATCATCGT-TGCTTCCGCTCTATACTCTTGGCATTGTAA 770
Query 436 TGTCACTCTCTACAGGACTAGCTAATGTTAGCCTTAAGTATAACAGTGTTGGATTCTACC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGTCACTCTCTACAGGACTAGCTAATGTTAGCCTTAAGTATAACAGTGTTGGATTCTACC 830
Query 496 AGATGGCGAAAATCGCTGTTACGCCTTCTATCGTGTTTGCAGAGTTTTTGTGGTATAGAA 555
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 831 AGATGGCGAAAATTGCTGTTACGCCTTCTATCGTGTTTGCAGAGTTCTTGTGGTATAGAA 890
Query 556 AGAGAGTTTCTTTCATGAAGGTGGT-TGCACTTACAGTTGTATCTGTGGGAGTTGCGGTT 614
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 891 AGAGAGTTTCTTTCATGAAGGTGGTAT-CACTTACAGTTGTATCTGTGGGAGTTGCGGTT 949
Query 615 GCGACTGTAACAGATTTACAGTTTAGTCTTTTTGGTGCTTGTGTAGCATTCGCATGGATC 674
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 950 GCGACTGTAACAGATTTACAGTTTAGTCTGTTTGGTGCTTGTGTAGCATTCGCATGGATC 1009
Query 675 ATACCGAGCGCAACTAACAAAATCTTGTGGTCCAATATGCAACAACGAGAAAACTGGACT 734
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1010 ATACCAAGCGCAACTAACAAAATCTTGTGGTCTAATATGCAGCAACGAGAAAACTGGACT 1069
Query 735 GCTTTAGCGTTGATGTGGAAAACGACGCCAATTACTCTGTTGTTTCTTGTATCGATGATT 794
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1070 GCTTTGGCGTTGATGTGGAAAACGACGCCAATCACTCTGTTGTTTCTTGTATCGATGATT 1129
Query 795 CCGTTCTTGGATCCGCCAGGTGCTCTATCTTTCAATTGGAG-TTATGCCAACACATCTGC 853
||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1130 CCGTTCTTGGATCCGCCCGGTGCTCTATCGTTCAATTGGAGCTTAA-CCAACACATCTGC 1188
Query 854 CATTCTTGTTTCCGCTCTTCTCGGATTCTTTCTTCAATGGTCAGGAGCCTTAGCTCTCGG 913
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1189 CATTCTTGTTTCTGCTCTTCTCGGATTCTTTCTTCAATGGTCAGGAGCCTTAGCTCTAGG 1248
Query 914 AGCAACGTCTGCAATAACACATGTAGTGCTCGGACAATTCAAGACCTGTGTTCTCCTTCT 973
|||||| |||||||| || ||||| ||||| ||||| |||||||| ||||| ||||| ||
Sbjct 1249 AGCAACTTCTGCAATTACGCATGTGGTGCTAGGACAGTTCAAGACTTGTGTCCTCCTCCT 1308
Query 974 TGGAAACTACTACATTTTCGGGTCGAATAGCGGTTTGATTAGCGTTTGCGGTGCGTTTGT 1033
|||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 1309 TGGAAACTACTACATTTTCGGGTCGAATAGTGGTTTCATTAGCGTTGGCGGTGCGTTTGT 1368
Query 1034 GGCGATTATGGGGACTTCGTTATATACTTACCTTAACACGAGAGGTCCATCTCTTAAAGC 1093
|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||| |
Sbjct 1369 GGCGATTATGGGAACTTCGTTATATACATACCTTAACACGAGAGGTCAATCTCTTAAAAC 1428
Query 1094 TTCGTCTTCTTCTTCTGCTCTCTCAGACAAGAAGTCAAGATTTAGTGATCTTAAGGATGA 1153
|||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||
Sbjct 1429 TTCGTCTTCTTCTTCTGCTCTCTCGGAGAAGAAGTCAAGATTCAGTGATCTTAAGGATGA 1488
Query 1154 TGACAAGAATCTTGAACCTTACGGCTCCGAAGCTGTCTAGTCTAGTCTAACTTT-GTA 1210
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1489 TGACAAGAATCTTGAACCTTACGGCTCCGAAGCTGTCTAGTCTAGGCTAACTTTTGTA 1546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59588046915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5