BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950392
Length=1408
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57130.1 | Symbols: | Clp amino terminal domain-containing ... 1059 0.0
> AT5G57130.1 | Symbols: | Clp amino terminal domain-containing
protein | chr5:23144980-23149568 FORWARD LENGTH=3571
Length=3571
Score = 1059 bits (573), Expect = 0.0
Identities = 752/836 (90%), Gaps = 22/836 (3%)
Strand=Plus/Plus
Query 3 ACAGGACAATTAG-GTTTCATGGGCACAAACTACT-CATATGGCTTGCCTTATGGATCAT 60
||||||||||| | || | ||||| | ||||| | | ||||||||||||||||||||||
Sbjct 2028 ACAGGACAATT-GAGTATGATGGG--C-AACTA-TCCCTATGGCTTGCCTTATGGATCAT 2082
Query 61 CAAACGAGTCATCGAGATC-AGTACCTTTGATTGATTCCTTGGGTTTAAAGCAAAATCAG 119
|| | ||||| |||| ||| | | ||||||||||||| || ||||| |||| ||||||
Sbjct 2083 CACATGAGTCTTCGAAATCAACT-TCTTTGATTGATTCATTAGGTTTGAAGCCGAATCAG 2141
Query 120 CGAGTCACGAACTCGATTGCCAAATTCAGACGTCAGAATTCTTGCACCATTGAGTTTGAT 179
|||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2142 CGAGCCACAAACTCGATTGCTAAATTCAGACGTCAGAATTCTTGCACCATTGAGTTTGAT 2201
Query 180 TTGGGTGGAAACGAATATGAGAAGGGTGA---G----A--AAGCTGAAAATGACAAGGGA 230
||||||||||||||| ||||||||||||| | | |||||||| |||||||||||
Sbjct 2202 TTGGGTGGAAACGAACATGAGAAGGGTGAGTCGATCAATGAAGCTGAAGATGACAAGGGA 2261
Query 231 AATGAGACAATCACTCTTGATTTGGGGCGTTCTCTGTTTCGATCAGATTCCCTAACAGAG 290
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2262 AATGAGACGGTCACTCTTGATTTGGGGCGTTCTCTGTTTCGATCAGATTCCGTAACAGAT 2321
Query 291 ACCAAAAAGAAGATCAGTGATTTGGTCAAAGTTTTGGAGGAGAGTCTTCCATGGCAAACT 350
|| | | |||| |||| | ||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 2322 ACGAGACTGAAGCTCAGCGCTTTGGTCAAAGCTTTGGAGGAGAGTATTCCAAGGCAAACT 2381
Query 351 GTGACAATGCGTCTAATTGCTGAGAGTTTAATGGATTGCGTGTCAAAGAAGAAAGAC-GC 409
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2382 GTGACAATGCGTCTTATCGCTGAGAGTTTAATGGATTGCGTGTCAAAGAAGAAAGACAG- 2440
Query 410 TTGGATTATGATCGAGGGCAGGGACATAGCCGCGAAGAGGAGAGTAGCTCGTACTGTATC 469
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2441 TTGGATTATAATCGAGGGCAGGGACACAACCGCGAAGAGGAGAGTAGCTCGTACTGTATC 2500
Query 470 TGAATCTGTTTTCGGATCTATCGAGTCTCTGGTTCATATTGACCTTAAGAAGAAAGGCAA 529
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2501 TGAATCTGTTTTCGGATCTTTCGAGTCTCTGGTTCATATTGACCTTAAGAAGAAAGGAAA 2560
Query 530 CGAGTCAAAGACCAGCCCGGAAACGCTACTTGCTTGTGAATTGAAGAACCCTGAGAAGGT 589
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2561 CGAGTCAAAGGCCAGCCCGGCAACGCTACTTGCTTATGAATTGAAGAACCCTGAGAAGGT 2620
Query 590 TGTATTCTTGATTGAGGACATCGATTTGGCGGATTCCCGTTTCTTGAAACTCCTTGCTGA 649
||| ||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 2621 TGTGTTCTTGATTGAAGACATTGATTTGGCAGATTCCCGCTTCTTGAAACTCCTTGCTGA 2680
Query 650 CCGGTTTGAGGAGAGGCGGAGGAGTAAAACCGGCTTT-GATCATCGCCAAGCGATCTTTA 708
||||||||||| | ||||||| ||||||||| | | |||||||||||||| |||||||
Sbjct 2681 TCGGTTTGAGGACAAACGGAGGATTAAAACCGG-TATCGATCATCGCCAAGCCATCTTTA 2739
Query 709 TTTTGACGAAGGAGGATTCAAGCAATGCAAGAAACAGAGACTCTGTTTTACAAATTGGTT 768
||||||| |||||||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 2740 TTTTGACAAAGGAGGATTCAAGGAATGTGAGAAACAGAGACTCTGTTTTGCAAATTGGTT 2799
Query 769 TGGAGATCACGGCACAGAGTCCGGGGAAAAAGAGAAAACCCGAGTCGGATTTATCG 824
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 2800 TGGAGATCACGGCACAGAGTCCAGGGAAAAAGAGAAAACCCGAATCGGATTTATCG 2855
Score = 791 bits (428), Expect = 0.0
Identities = 526/570 (92%), Gaps = 20/570 (4%)
Strand=Plus/Plus
Query 857 GATCGAGAATGGGTTTTGGATCAAGAAGGAAGTGTGCTCTAGGCAATCGAGTTTCAATAG 916
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2855 GATCGAGAATGGGTTTTGGATGAAGAAGGAAGTGTGCTCTAGGCAATCGAGTTTCAATAG 2914
Query 917 CTCTTATCTCGACCTGAACATAAAAGCTG-A-A-GAAG-A--AGAAGGAGAGATCAGTCC 970
|||||| |||||||||||||||||||||| | | |||| | |||||| |||||||||||
Sbjct 2915 CTCTTACCTCGACCTGAACATAAAAGCTGAAGACGAAGAAGTAGAAGGTGAGATCAGTCC 2974
Query 971 GATTTCAAGCGATTTAACCGGAGAGGAGGAGACAGAG-T-T-CTCTTCCAGCAACTTTTT 1027
||||||||||||||||| |||||||||||||||||| | | |||||| ||||||||| |
Sbjct 2975 AATTTCAAGCGATTTAACAGGAGAGGAGGAGACAGAGTTCTCCTCTTCAAGCAACTTTCT 3034
Query 1028 AAACCGAATTCAAAACCGGTTTGTCCTAAACCA-GTCATGCGAACCAGGTATAGAAAAAG 1086
|||||| ||||||||||||||||||||||| || |||||| ||||||||||| |||||||
Sbjct 3035 AAACCGGATTCAAAACCGGTTTGTCCTAAA-CAGGTCATGTGAACCAGGTATCGAAAAAG 3093
Query 1087 CCATGATAACAGCAGCTTTCAGGGAGGTTTTTCC--AGA--GAAGGAAGGAGGTGGAGTT 1142
|||||||||||||||||||||||| ||||||| ||| ||| |||||||| ||||||
Sbjct 3094 GTATGATAACAGCAGCTTTCAGGGAGATTTTTCCTGAGAGGGAA-GAAGGAGGCGGAGTT 3152
Query 1143 AGGTTTAGCGTGGAGGATAAGTTAGCGGAGGAGCTATGCGGGGTTCAAAACGGTGCGTTT 1202
||||||||||||||||| ||||||| |||||||| | |||| |||||||||||||||||
Sbjct 3153 AGGTTTAGCGTGGAGGACAAGTTAGTAGAGGAGCTTTACGGGATTCAAAACGGTGCGTTT 3212
Query 1203 GAAAGTTGGTTAAAGGAGGTTTTTCAAACGGGGTTACTAACGGTTAAAAAGGGCGGGAAA 1262
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3213 GAAAGATGGTTAAAGGAGGTTTTTCAAACGGGGTTACTAACGGTTAAAAAGGGAGGGAAA 3272
Query 1263 AAGGATACGGGTGTAATTAGGATGGTGTTTGGGGGTATAGTTGACAACAAAGGATATGGT 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3273 AAGGATACGGGTGTAATTAGGATGGTGTTTGGGGGTATAGTTGACAACAAAGGATATGGT 3332
Query 1323 GGGGGTGTTGGTGGGTACATGGGTACATTTCTTCCGAACAAAGTCCAAGTTTCCAAGTTC 1382
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3333 GGGGGTGTTGGTGGGTACATGGCTACATTTCTTCCGAACAAAGTCCAAGTTTCCAAGTTC 3392
Query 1383 GAGTAG-A---TCTTTCGGTTTAATTTCTT 1408
|||||| | |||||||||| ||||||||
Sbjct 3393 GAGTAGTAGAATCTTTCGGTTAAATTTCTT 3422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69377153190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5