BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950397

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57170.2 | Symbols:  | Tautomerase/MIF superfamily protein |...   523    4e-148


> AT5G57170.2 | Symbols:  | Tautomerase/MIF superfamily protein 
| chr5:23162071-23163209 REVERSE LENGTH=775
Length=775

 Score =  523 bits (283),  Expect = 4e-148
 Identities = 316/332 (95%), Gaps = 2/332 (1%)
 Strand=Plus/Plus

Query  1    AGGAGAAGCTTTTTAAAAAGATGCCCACTTTAAATCTCTTCACTAACATTCCAGTCGACG  60
            ||||||| |  || ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  52   AGGAGAAAC--TTCAAAAAGATGCCCACTTTGAATCTCTTCACTAACATACCAGTCGACG  109

Query  61   CCGTCACTTGCTCCGATATCCTCAAGGATGCTACTAAGGCCGTCGCTAAAATCATCGGCA  120
            ||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||||
Sbjct  110  CCGTCACTTGCTCAGACATCCTCAAGGACGCCACTAAGGCCGTCGCTAAAATCATCGGCA  169

Query  121  AACCTGAATCCTATGTGATGATACTGCTCAACAGTGGAGTGCCCATTGCATTTGCCGGTA  180
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  170  AACCTGAATCCTATGTGATGATACTGCTTAACAGTGGAGTGCCCATTGCATTTGCCGGTA  229

Query  181  CGGAGGAACCTGCTGCATATGGAGAATTGATATCTATAGGGGGATTAGGACCTGGTGTAA  240
            | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct  230  CCGAGGAACCTGCTGCATATGGAGAATTGATATCTATTGGGGGATTAGGACCTGGCGTAA  289

Query  241  ACGGGAAGCTTAGCGAGACGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGATAGCT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  290  ACGGGAAGCTTAGCGAGACGATATCTGAGATTCTCCAAATTAAGCTCTCCATAGACAGCT  349

Query  301  CTCGCTTTTATATCAAATTCTACGATTCCCCG  332
            |||||||||||||||||||||||||||| |||
Sbjct  350  CTCGCTTTTATATCAAATTCTACGATTCTCCG  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5