BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950402

Length=902
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G58340.1 | Symbols:  | myb-like HTH transcriptional regulato...   392    3e-108


> AT5G58340.1 | Symbols:  | myb-like HTH transcriptional regulator 
family protein | chr5:23582495-23584412 FORWARD LENGTH=1626
Length=1626

 Score =  392 bits (212),  Expect = 3e-108
 Identities = 260/283 (92%), Gaps = 4/283 (1%)
 Strand=Plus/Plus

Query  596   AGGGGATCAAAGTGCTGTTGATGAAAGCACAAGGCG-TTTGGAGAGTGATACTATTGATA  654
             |||||||||||||| ||||||||||||||| || || ||||| |||||||||||||||||
Sbjct  745   AGGGGATCAAAGTGATGTTGATGAAAGCACGAGACGTTTTGG-GAGTGATACTATTGATA  803

Query  655   TCGCCAACGAGTCGCGTGGTGAAAGGGAGGACGGTAATGGGATTAATAGAGAGAACGCTA  714
             ||||||||||| |||||||||||||||||||||| |||||||||  |||||| |||||||
Sbjct  804   TCGCCAACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTA  863

Query  715   ATGATGGTGATGGAATGGACTGTCTCGAGAATGATGGGATTGATAATGTGAATGCAGCAG  774
             |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct  864   ATGATGGTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAG  923

Query  775   AGGAGGAGCACACAATGAGTGCACAAGAACTGGAACATGAGCCAAGTCTTGATAAGGGAG  834
             | |||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct  924   ACGAGGAGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAG  983

Query  835   ACAAAATGGTTGCTCGAGAGCTGAAGTATTATTT-GTTAGAGA  876
             || |||||| |||||||||||||||| | ||||| || |||||
Sbjct  984   ACGAAATGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGA  1025


 Score = 93.5 bits (50),  Expect = 3e-18
 Identities = 67/75 (89%), Gaps = 2/75 (3%)
 Strand=Plus/Plus

Query  525  AATGGGAGACTGATTTTAAGAAGGCTC-TCGAGGAACCTGAGCTCTATCAGCGAATTCGT  583
            ||||||||| |||||| |||||||| | | || || ||||||||||||||||||||||||
Sbjct  531  AATGGGAGAGTGATTTGAAGAAGGCCCTTGGA-GATCCTGAGCTCTATCAGCGAATTCGT  589

Query  584  GAGACTAATATCAGG  598
            |||||||| ||||||
Sbjct  590  GAGACTAACATCAGG  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44055346919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5