BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950414

Length=404
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57290.1 | Symbols:  | 60S acidic ribosomal protein family |...   651    0.0  


> AT5G57290.1 | Symbols:  | 60S acidic ribosomal protein family 
| chr5:23206802-23207926 REVERSE LENGTH=701
Length=701

 Score =  651 bits (352),  Expect = 0.0
 Identities = 387/404 (96%), Gaps = 2/404 (0%)
 Strand=Plus/Plus

Query  1    TTTgaagaagaagaagaagagaTGGGAGTTTTCACATTCGTTTGCAAAAGCAAAGGCGGA  60
            ||||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct  73   TTTGAAG-A-AAGAAGAAGAGATGGGAGTTTTCTCATTCGTGTGCAAAAGCAAAGGCGGA  130

Query  61   GAATGGACCGCAAAGCAATACGAAGGAGATCTTGAAGCTTCAGCTTCTTCTACTTACGAT  120
            |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct  131  GAATGGACCGCAAAGCAACACGAAGGAGATCTTGAAGCTTCAGCTTCTTCCACCTACGAT  190

Query  121  CTCCAGCGCAAGCTTGTTCAGACTGCTCTCTCCGCCGATTCTTCTGGCGGCGTTCAGTCT  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  191  CTCCAGCGCAAGCTTGTTCAGACTGCTCTCTCCGCCGATTCATCTGGCGGCGTTCAGTCT  250

Query  181  TCTTTCTCCCTTATCTCTCCTACCTCCGCCGTCTTCCAGGTGATCATtggtggtggtggt  240
            |||||||| ||| |||||||||||||||||||||||  |||| |||||||||||||||||
Sbjct  251  TCTTTCTCTCTTGTCTCTCCTACCTCCGCCGTCTTCGTGGTGGTCATTGGTGGTGGTGGT  310

Query  241  ggtggaggatttgctgccggaggaggtgcagctgctggtggtggtggtggaggtgaggCT  300
            |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  311  GGTGGAGGATTTGCTGCCGGAGGAGGTGCAGCTGCTGGAGGTGGTGGTGGTGGTGAGGCT  370

Query  301  GCTGCAGCCACAaaggaggaagagaagaagaaggaagaatctgaagaggaagaaggagaC  360
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  371  GCCGCAGCCACAAAGGAGGAAGAGAAGAAGAAGGAAGAATCTGAAGAGGAAGAGGGAGAC  430

Query  361  TTTGGATTTGATCTCTTTGGTTAAGAGACCTAAAACAACTTTGT  404
            ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  TTTGGATTTGATCTCTTTGGTTAAGAGACCTAAAACAACTTTGT  474



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19101744620


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5