BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950416
Length=227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57310.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 189 9e-48
> AT5G57310.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23211030-23211620 FORWARD LENGTH=309
Length=309
Score = 189 bits (102), Expect = 9e-48
Identities = 178/212 (84%), Gaps = 16/212 (8%)
Strand=Plus/Plus
Query 21 AATGAGAGTGAGTGAGACTCGGATTCCACTGCCGCGAAAACCGCCATTCAAGGCTACGGT 80
||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 102 AATGAGA--GAGCGAGACTCGGATTCCACTGCCGCGAAAACCGCCGTTCAAGGCTACGAT 159
Query 81 TATGGCCGGAATTGTTTGGATCCGCGACGGAGGAAGACGAAATCGTAGGAGGATAGATGA 140
|||| |||||||||||||||||| |||| ||| |||||||| |||| |||||| |||||
Sbjct 160 TATGACCGGAATTGTTTGGATCCACGACTGAGTAAGACGAATTCGTTGGAGGAAAGATGG 219
Query 141 AAGAGAA-GT-AAGC----TCACCTGC-AACTGCGGCGGAGGTTATTTGTGCGGTG---- 189
| ||||| | || | | |||||| || |||| ||||||||||| ||||||||
Sbjct 220 AGGAGAAAGAGAAACAAAATTACCTGCGAA-TGCGACGGAGGTTATT-GTGCGGTGCGTC 277
Query 190 -AGGAGACGAACTCGTTAGTGCATTTTGTTAA 220
||||||||||||||||||| | |||||||||
Sbjct 278 GAGGAGACGAACTCGTTAGTCCGTTTTGTTAA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10204353047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5