BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950418
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57330.1 | Symbols: | Galactose mutarotase-like superfamily... 1618 0.0
> AT5G57330.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr5:23218214-23221089 FORWARD LENGTH=1463
Length=1463
Score = 1618 bits (876), Expect = 0.0
Identities = 936/966 (97%), Gaps = 0/966 (0%)
Strand=Plus/Plus
Query 13 TACTCTCCATGGCGACGGAGCGTCATCATTTTGAGCTTGCTAAAGGCATCAATGGCCTTG 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TACTCTCCATGGCGACGGAGCGTCATCATTTTGAGCTTGCTAAAGGCATCAATGGCCTTG 230
Query 73 ATAAGATCATCCTCCGCGAGTCTCGCGGCCGCTCTGCCGAGGTATACTTGTATGGAAGTC 132
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 231 ATAAGATCGTTCTCCGCGAGTCTCGCGGCCGCTCTGCAGAGGTATACTTGTATGGAAGTC 290
Query 133 ATGTGACTTCTTGGAAGAATGAGAATGGAGAAGAGTTACTTCACCTCAGTAGCAAGGCCA 192
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 291 ATGTAACTTCTTGGAAGAATGAGAACGGAGAGGAGTTACTTCACCTCAGTAGCAAGGCCA 350
Query 193 TATTCAAGCCCCCGAAACCAATACGTGGAGGGATTCCCCTATGCTTTCCACAATTCAGTA 252
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 351 TATTCAAGCCCCCGAAACCAATACGTGGAGGGATTCCCCTATGTTTTCCACAATTCAGTA 410
Query 253 ACTTTGGTACACTTGAATCACATGGCTTTGCTAGAAATAGGATCTGGGAAGTTGAGGCTA 312
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 411 ACTTTGGTACACTCGAATCACATGGCTTTGCTAGAAATAGGATCTGGGAAGTCGAGGCTA 470
Query 313 ACCCACCTCCGTTGCCATTAAATTCTTGTTCTAGTGCTTTTGTTGACCTGATCCTAAGGC 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 ACCCACCTCCGTTGCCATTAAATTCTTGTTCTAGTGCTTTTGTTGACCTGATCCTAAGGC 530
Query 373 CAACTGAAGAAGATCTGAAAATCTGGCCTCACAATTTTGAGTTCAGGCTGAGGGTAGCCT 432
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 531 CAACTGAAGACGATCTGAAAATCTGGCCTAACAATTTTGAGTTCAGGCTGAGGATAGCCT 590
Query 433 TGGGGACCGAAGGAGAATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAA 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGGGGACCGAAGGAGAATTAACTCTGACATCTCGTATCAGGAACACCAACTCTGATGGAA 650
Query 493 AGCCGTTTACATTCACATTTGCTTATCATACTTATTTCTCTGTCTCAGACATCAATGAAG 552
|||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct 651 AGCCGTTTACATTCACATTTGCTTATCACACCTATTTCTCTGTCTCAGACATCAGTGAAG 710
Query 553 TACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTAAAGAACAGAGAACGTT 612
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 711 TACGGGTTGAAGGATTGGAAACGTTGGATTATCTTGACAACTTGAAGGACAGAGAACGTT 770
Query 613 TTACCGAACAAGGCGACGCAATAACGTTTGAATCCGAAATTGACAAGATTTATCTAAGCA 672
|||||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||
Sbjct 771 TTACCGAACAAGGCGATGCGATAACTTTTGAATCCGAAGTTGACAAGATTTATCTAAGCA 830
Query 673 CGCCTACAAAGATTGCTATTTTGGACCACGAGAAAAAGAGGACTTTCGTTATTCGCAAGG 732
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 831 CGCCAACAAAGATTGCTATTTTGGATCACGAGAAAAAGAGGACTTTCGTTATTCGCAAGG 890
Query 733 ACGGGCTTGCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAATCAAAGACGATCTCTG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ACGGGCTTGCTGATGCTGTGGTGTGGAATCCTTGGGATAAGAAATCAAAGACGATCTCTG 950
Query 793 ACTTGGGAGATGAAGACTATAAGTATATGCTTTGTGTGGAAGCTGCGGCTATAGAGAGAC 852
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 951 ACTTGGGAGATGAAGACTATAAGCATATGCTTTGTGTGGAAGCTGCGGCTATCGAGAGAC 1010
Query 853 CAATCACATTGAAACCGGGTGAAGAATGGAAAGGAAGACTCGAACTCTCTGCGGTTCCTT 912
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1011 CGATCACATTGAAACCCGGTGAAGAATGGAAAGGAAGACTCGAACTCTCTGCAGTTCCTT 1070
Query 913 CTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTT 972
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 CTAGTTACTCCAGTGGACAGCTTGACCCCAAGAAAGTCCTTGAGTGACTCTTTCAAACTC 1130
Query 973 AAAAAA 978
|||||
Sbjct 1131 CAAAAA 1136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5