BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950423
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57360.2 | Symbols: ZTL, LKP1, ADO1, FKL2 | Galactose oxidas... 2920 0.0
> AT5G57360.2 | Symbols: ZTL, LKP1, ADO1, FKL2 | Galactose oxidase/kelch
repeat superfamily protein | chr5:23241427-23244590
FORWARD LENGTH=2226
Length=2226
Score = 2920 bits (1581), Expect = 0.0
Identities = 1736/1813 (96%), Gaps = 2/1813 (0%)
Strand=Plus/Plus
Query 1 TCTCGTAACTCTTTGAAATTTCATGGAGTGGGACAGTGGTTCCGATCTAAGCGCCGATGA 60
||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TCTGGTAACTATTTGAATTTTCATGGAGTGGGACAGTGGTTCCGATCTAAGCGCCGATGA 208
Query 61 TGCTTCGTCAGTGGCGGATGATGAAGAGGGAGGTCTTTTTCCCGGCGGCGGACCAATTCC 120
|||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 209 TGCTTCGTCACTGGCGGATGATGAAGAGGGAGGTCTTTTTCCCGGAGGTGGACCAATTCC 268
Query 121 ATTTCCCGTTGGGAATTTGCTTCATACTGCGCCTTGTGGATTCGTTGTTACTGATGCCGT 180
|| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 269 ATATCCCGTTGGGAATTTGCTTCACACGGCGCCTTGTGGATTCGTTGTTACTGATGCCGT 328
Query 181 TGAGCCGGACCACCCTATTATCTATGTCAACACCGTCTTCGAAATGGTTACTGGATATCG 240
|||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 329 TGAGCCGGACCAACCTATTATATATGTCAACACCGTCTTCGAAATGGTTACAGGGTATCG 388
Query 241 CGCTGAGGAGGTTCTCGGAGGAAATTGCCGCTTCTTGCAATGTAGAGGACCGTTTGCTAA 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 TGCTGAGGAAGTTCTCGGAGGAAATTGCCGCTTCTTGCAATGTAGAGGACCGTTTGCTAA 448
Query 301 AAGAAGGCATCCATTAGTTGACTCTATGGTTATTTCCGAGATAAGAAAATGTATTGATGA 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 449 AAGAAGGCATCCATTAGTTGACTCTATGGTTGTTTCCGAGATAAGAAAATGTATTGATGA 508
Query 361 GGGCATTGAATTTCAAGGCGAGTTGTTGAACTTTAGGAAAGATGGATCTCCGTTGATGAA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GGGCATTGAATTTCAAGGCGAGTTGTTGAACTTTAGGAAAGATGGATCTCCGTTGATGAA 568
Query 421 TAGACTGCGGCTT-ACTCCTATTTATGGAGATGACGATACCATCACCCATATAATCGGCA 479
|||| ||||| || ||||||||||||||||| || ||||| || ||||||||||| || |
Sbjct 569 TAGATTGCGG-TTGACTCCTATTTATGGAGACGATGATACTATTACCCATATAATTGGAA 627
Query 480 TCCAGTTCTTTATTGAGACAGACATTGACCTTGGACCCGTTCTTGGATCTTCAACAAAAG 539
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 628 TCCAGTTCTTTATCGAGACAGACATTGACCTTGGACCTGTTCTTGGATCTTCAACAAAAG 687
Query 540 AAAAATCAATCGATGGGATATACTCAGCTTTAGCTGCTGGGGAGCGAAATGTTTCCCGAG 599
|||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 688 AAAAGTCAATTGATGGGATATACTCAGCTTTAGCTGCTGGGGAGCGGAATGTTTCCCGAG 747
Query 600 GGATGTGTGGATTATTCCAGCTGAGTGATGAGGTTGTGTCTATGATGATATTGTCACGCC 659
| |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 748 GAATGTGTGGGTTATTCCAGCTGAGTGACGAGGTTGTGTCTATGAAGATATTGTCACGCC 807
Query 660 TGACACCAAGAGACGTTGCGTCTGTTAGCTCTGTATGTCGCAGGCTATATGTGCTGACAA 719
||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 808 TGACACCAAGAGACGTTGCATCTGTTAGCTCTGTGTGCCGCAGGCTATATGTGCTGACAA 867
Query 720 AGAACGAGGATCTTTGGCGAAGGGTTTGTCAGAATGCATGGGGAAGTGAGACAACACGCG 779
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 868 AGAATGAGGATCTTTGGCGAAGGGTTTGTCAGAATGCATGGGGAAGTGAAACAACACGGG 927
Query 780 TATTAGAGACTGTTCCTGGTGCTAAAAGACTCGGTTGGGGGCGCCTGGCTAGAGAACTGA 839
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 928 TATTAGAGACTGTTCCTGGTGCTAAAAGACTCGGTTGGGGCCGCTTGGCTAGAGAACTGA 987
Query 840 CCACCCTTGAAGCTGCAGCTTGGAGAAAACTTACTGTTGGAGGTTCTGTTGAGCCGTCTC 899
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 988 CCACCCTTGAAGCTGCAGCTTGGAGAAAACTTTCGGTTGGAGGTTCTGTTGAGCCTTCTC 1047
Query 900 GCTGTAATTTCAGTGCTTGTGCTGTCGGGAACAGAGTGGTTCTGTTTGGAGGAGAAGGTG 959
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1048 GCTGTAATTTTAGTGCTTGTGCTGTCGGGAACAGAGTTGTTCTGTTTGGAGGAGAAGGTG 1107
Query 960 TGGATATGCAGCCTATGAATGATACCTTTGTTTTAGATCTTAATTCGGATTACCCTGAAT 1019
|| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1108 TGAATATGCAGCCTATGAATGATACCTTTGTTTTAGATCTGAATTCTGATTACCCTGAAT 1167
Query 1020 GGCAACATGTCAAAGTGAGCTCCCCTCCTCCGGGACGCTGGGGCCACACGCTTTCTTGTG 1079
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1168 GGCAACATGTCAAAGTGAGCTCCCCTCCTCCAGGACGCTGGGGCCACACGCTCACTTGTG 1227
Query 1080 TAAATGGCTCCAATCTGGTTGTATTTGGTGGCTGTGGTCAGCAAGGTTTGCTGAACGATG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 TAAATGGCTCCAATCTGGTTGTATTTGGTGGCTGTGGTCAGCAAGGTTTGCTGAACGATG 1287
Query 1140 TGTTTGTCTTGAATCTCGATGCCAAGCCGCCTACTTGGAGGGAGATTTCGGGTTTGGCTC 1199
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1288 TGTTTGTCTTGAATCTCGATGCTAAGCCGCCTACTTGGAGGGAAATTTCGGGTTTGGCTC 1347
Query 1200 CACCTCTACCAAGATCATGGCATAGCTCATGCACCCTTGACGGAACCAAACTGATCGTCT 1259
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1348 CGCCTCTACCAAGATCATGGCACAGCTCATGCACCCTTGACGGAACCAAACTGATAGTCT 1407
Query 1260 CAGGAGGCTGTGCAGATTCCGGCGTTCTTCTAAGTGACACGTTCCTCCTCGACCTTTCAA 1319
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 CTGGAGGCTGTGCAGATTCCGGCGTTCTTCTAAGTGACACGTTCCTCCTCGACCTTTCAA 1467
Query 1320 TAGAGAAACCAGTGTGGAGAGAGATTCCAGCTGCCTGGACCCCGCCTTCCCGGTTAGGCC 1379
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1468 TAGAGAAACCAGTGTGGAGAGAGATTCCAGCTGCCTGGACTCCGCCTTCCCGGTTAGGCC 1527
Query 1380 ACACACTATCGGTTTATGGAGGAAGAAAGATCTTAATGTTTGGTGGTCTTGCTAAAAGCG 1439
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1528 ACACACTATCGGTTTATGGAGGAAGAAAGATCTTGATGTTTGGTGGTCTTGCTAAGAGCG 1587
Query 1440 GGCCTTTGAGATTCCGTTCGAGCGATGTCTTCACAATGGATCTAAGCGAAGAGGAGCCTT 1499
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1588 GGCCTTTGAAATTCCGTTCGAGTGATGTCTTCACAATGGATCTAAGCGAAGAGGAGCCTT 1647
Query 1500 GTTGGAGGTGTGTGACCGGTAGCGGAATGCCTGGAGCAGGAAACCCAGGAGGAGTAGCCC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1648 GTTGGAGGTGTGTGACCGGTAGCGGAATGCCTGGAGCAGGAAACCCAGGAGGAGTAGCAC 1707
Query 1560 CACCACCGAGGCTGGATCACGTGGCAGTTAACCTCCCTGGAGGCAGAATCTTGATCTTTG 1619
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1708 CACCACCAAGGCTAGATCACGTTGCAGTTAACCTCCCTGGAGGCAGAATCTTGATATTTG 1767
Query 1620 GCGGTTCGGTGGCAGGGCTTCACTCAGCGTCTCAGCTTTATCTACTTGACCCAACGGAGG 1679
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GCGGCTCAGTGGCAGGGCTTCACTCAGCGTCTCAGCTTTATCTACTTGACCCAACGGAGG 1827
Query 1680 ACAAACCGACTTGGAGAATACTAAACATCCCAGGGAGACCGCCTCGGTTTGCTTGGGGAC 1739
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1828 ACAAACCGACTTGGAGAATACTAAACATTCCAGGAAGACCGCCTCGGTTTGCTTGGGGAC 1887
Query 1740 ACGGCACTTGTGTTGTGGGAGGAACACGAGCCATAGTGCTGGGTGGTCAGACCGGAGAAG 1799
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1888 ATGGCACTTGTGTTGTGGGAGGAACACGAGCGATAGTGCTAGGTGGTCAGACCGGAGAAG 1947
Query 1800 AGTGGATGCTAAG 1812
| |||||||||||
Sbjct 1948 AATGGATGCTAAG 1960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5